Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2010 |
Symbol | |
ID | 5078213 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 2293010 |
End bp | 2293636 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640499170 |
Product | outer membrane lipoprotein carrier protein LolA |
Protein accession | YP_001183530 |
Protein GI | 146293106 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00564496 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACC TTTTATGCGC AGTGATGTTA ACGTCACCTT TATTATATAG CACTGCTGTT TTTGCTGATG ATGCGCAGCA ACTTAGGAAC ACACTGGTTA ACACGGCCTC ACTCAAGACG GATTTTAAGC AAACCGTGAC CGATGTGAAC AAAAAAGTTA TCCAAACTGG CTCTGGTATC TTAGCTCTAG CACATCCAAA CCAATTTTAT TGGCACTTAA CCTCACCCGA TGAATCACAA ATCGTCGCTG ATGGAAAAGA TTTGTGGATT TACAATCCTT TTGCGGAGGA AGTGGTGATT ATGGATTTTG CGGAGGCAAT CAATGCCTCA CCTATTGCAT TATTAGTTCA CCGAGATGAC ACCACTTGGT CACAATATTC GGTGACCAAA AAGCAAGATT GTTATGACAT TCGACCTAAA GCTATTGATT CGGGCATTGT GACTGTGAGT GTGTGTTTTA AAAATTCACA ACTGACTAAG TTCAATGTAC TTGATGACAA AGGAAATATC AGCCAGTTTG ATTTAAGCAA TCAAAAAGTC ATCACAACTG AAGACAAGGC GTTGTTTAAG TTTGTTTTAC CTGAGAATGT CGATATCGAT GATCAGCGTC TTAAAACGCT TAACTAG
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Protein sequence | MKNLLCAVML TSPLLYSTAV FADDAQQLRN TLVNTASLKT DFKQTVTDVN KKVIQTGSGI LALAHPNQFY WHLTSPDESQ IVADGKDLWI YNPFAEEVVI MDFAEAINAS PIALLVHRDD TTWSQYSVTK KQDCYDIRPK AIDSGIVTVS VCFKNSQLTK FNVLDDKGNI SQFDLSNQKV ITTEDKALFK FVLPENVDID DQRLKTLN
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