| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2007 |
|---|
| Symbol | |
|---|
| ID | 5078210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2289998 |
|---|
| End bp | 2291284 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640499167 |
|---|
| Product | seryl-tRNA synthetase |
|---|
| Protein accession | YP_001183527 |
|---|
| Protein GI | 146293103 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0172] Seryl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000156378 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGATC CTAAATTTTT ACGCAACGAA TTAGCTGTTA CCGCGGAGCG ATTGGCCACT
CGAGGCTTTA TTTTAGATGT CGCTCATCTT ACTCAATTAG AAGAAAAACG TAAGTCGTTG
CAAGTGGCTA CTGAAGAATT GCAAGCGGCG CGTAATGCCA TCTCTAAATC CATCGGACAA
GCCAAAGCCC GCGGTGAAGA TGTTGACGCG ATCATGGCAC AAGTGGGGGA TTTAGGCTCT
CAACTCGATG CAAAAAAATT AGAACTGGCA GCTGTATTGG AAGAAGTGAA TGCGATTGCG
ATGTCCATGC CTAACCTGCC AGATGAATCT GCGCCAATTG GTGCCGATGA AACACAGAAT
GTCGAAGTAC GCCGTTGGGG CACACCACGT AGTTTTGATT TCCCGATCAA AGATCATATT
GACTTGGGCG AAGGATTAAA CGGTTTAGAT TTTAAAAGCG CGGTTAAGAT CACCGGCTCT
CGTTTTATCG TAATGAAAGG TCAAATCGCC CGATTAAATC GCGCCTTAGG TCAGTTTATG
TTGGATCTGC ATACGACTGA GCACGGTTAT ACCGAAGCCT ATGTGCCATT GCTGGTTAAT
GAAGCGAGTT TACTTGGCAC AGGCCAATTG CCGAAGTTTG GTGAAGACTT ATTCCATACC
AAACCCGCCA CCGAAGAAGG TCAAGGGTTA AGTTTGATCC CTACAGCAGA AGTGCCACTC
ACTAACTTAG TGCGTGACAG TATAGTCGAT GAAGACGAGT TACCGATTAA GCTAACAGCA
CATACAGCAT GTTTCCGAAG CGAAGCAGGA TCATACGGCA AAGATACCCG TGGTCTTATT
CGTCAGCATC AATTCGATAA AGTTGAACTC GTTCAATTAG TCAAACCAGA AGACTCAATG
GCTGCACTTG AAACGCTGAC AAATCATGCC GAAACTGTAC TGCAACGCTT AGGACTACCA
TATCGTACAG TTGTGTTATG TACGGGTGAT ATGGGTTTTG GCTCAAGCAA GACTTATGAC
ATCGAAGTCT GGTTACCAGG ACAAAATACC TACCGTGAAA TTTCTTCTTG CTCAAACATG
AAGGATTTCC AAGCCCGCCG TATGCAAGCG CGTTACCGTG TTAAAGCGGA TAATAAACCC
GCTTTGTTAC ACACATTAAA TGGCTCTGGT TTGGCTGTTG GCCGAACCTT AGTGGCGATA
TTAGAAAACT ATCAGAATGC TGATGGCAGT GTGACTATAC CAGAAGCATT GCGTTCTTAT
ATGGGTGGAT TAACCCAAAT CGGTTAA
|
|---|
| Protein sequence | MLDPKFLRNE LAVTAERLAT RGFILDVAHL TQLEEKRKSL QVATEELQAA RNAISKSIGQ
AKARGEDVDA IMAQVGDLGS QLDAKKLELA AVLEEVNAIA MSMPNLPDES APIGADETQN
VEVRRWGTPR SFDFPIKDHI DLGEGLNGLD FKSAVKITGS RFIVMKGQIA RLNRALGQFM
LDLHTTEHGY TEAYVPLLVN EASLLGTGQL PKFGEDLFHT KPATEEGQGL SLIPTAEVPL
TNLVRDSIVD EDELPIKLTA HTACFRSEAG SYGKDTRGLI RQHQFDKVEL VQLVKPEDSM
AALETLTNHA ETVLQRLGLP YRTVVLCTGD MGFGSSKTYD IEVWLPGQNT YREISSCSNM
KDFQARRMQA RYRVKADNKP ALLHTLNGSG LAVGRTLVAI LENYQNADGS VTIPEALRSY
MGGLTQIG
|
|---|
| |