| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1969 |
|---|
| Symbol | |
|---|
| ID | 5078417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2256638 |
|---|
| End bp | 2257657 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640499129 |
|---|
| Product | biotin/lipoyl attachment domain-containing protein |
|---|
| Protein accession | YP_001183490 |
|---|
| Protein GI | 146293066 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.166615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAC ATGTAACACT GGCAATGTTT ATTGCAGCCT GGCTGATGCC GATGCATGTA
ATGGCCGCCA ATGAGCAAGA ACAAGCTCAC GTCCATGCCA AAGAACAAGC GGTAAAGCCG
CAATCTGACA CTAAGAAAAA TGAAGAGCAC AAAAAACATG AAGAACACAA TGAGCATGAA
GGGCACGACG AAAACGACGA GCATGAACAC AACGAAACCC TAAGCAGCCG CATTAGTGAT
GATATGGCTA CGGCAGTTAA TATTGTCACA GACCGTGCTG ACAGCCAGCG ATTACGCCAA
CATCAGGTTG TTTATGGCAA GCTTAGCGCT GATCCAAACC GCATCAGCCA TGTTAATGCC
CGTTTTCCCG GTATTCTTAC CTCGGTGAAA TTCTCGCTGG GTGACAGCGT AAAAGCAGGC
GATGTACTGG CCGTTGTCGA GTCAAATGAG AGCTTAAATA CCTATACCAT TAAAGCGCCA
ATTGACGGCG TTATTATTCA GCGCAGCGCC AATGTTGGTG AAGTCGCACA GCAGCAGACG
CTGTTTAGCA TTGCTGATTT TGGCGGCCTG TGGGCAGATT TTCGCCTGTA CCCGTCACAA
CAAGATGCTG TCGCGACAGG ACAAAAAGTG GTCATTATGG CCGCTGACAC TGAGATTAAC
GGCGTAATTG CACATATCAT CCCGTCATTA ACCCAGCCCT ATCAACTGGC CAGAGTTAAG
CTGGATAACC GTGACGGTAA ACTGTCGTCC GGGCAATTAA TCGAGGGTGC TGTAATAAGC
GGTGAATTCA ACGTTGAGCT TGCCGTTAAA AAATCGGCCA TTCAAATACT GGACAATCAA
AGCGGTGTCT TCGTGAAAAA CAATACCGAA TATGTCTTTA CCCCATTGCA GCTTGGCCGT
AGCGACATGG ATTATGTCGA AGTGATTGCC GGTTTAAAGC CCGGCCAGTG GTATGTCACG
ACAAATAGCT ATCTGTTAAA AGCGGATATT GAGAAATCTG AAGCCGAGCA CGCGCATTAA
|
|---|
| Protein sequence | MKPHVTLAMF IAAWLMPMHV MAANEQEQAH VHAKEQAVKP QSDTKKNEEH KKHEEHNEHE
GHDENDEHEH NETLSSRISD DMATAVNIVT DRADSQRLRQ HQVVYGKLSA DPNRISHVNA
RFPGILTSVK FSLGDSVKAG DVLAVVESNE SLNTYTIKAP IDGVIIQRSA NVGEVAQQQT
LFSIADFGGL WADFRLYPSQ QDAVATGQKV VIMAADTEIN GVIAHIIPSL TQPYQLARVK
LDNRDGKLSS GQLIEGAVIS GEFNVELAVK KSAIQILDNQ SGVFVKNNTE YVFTPLQLGR
SDMDYVEVIA GLKPGQWYVT TNSYLLKADI EKSEAEHAH
|
|---|
| |