| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1934 |
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| Symbol | |
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| ID | 5078554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2215990 |
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| End bp | 2218803 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640499095 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001183456 |
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| Protein GI | 146293032 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0766434 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGTTTG TGGTCTACTT AATTGTGATC TTGTGCAGCT ATCTTTTGAG CATTACAGGG
CAGGCGAGTC CATTGCCTAA TGAGCCATTA ATCATCGTTA TGGGTGAAGA CAGTTTTCCC
TATCAATATG TGGATAGCGA AGGAGAACCG ACAGGATTAC TGGTTGATCT TTGGAAAGAA
TGGGCTAAGC AAACCCATAC AGAAGTGGTG TTTGTCGCAC GCCACTGGAA TGAATCTCTC
ACTCAATTAC AAAAAGGTAA AGCGCACGCT CATCTTGGTA TGGGAATAAC ACCAGAAAGA
CAGCAACTAT TTGATTTTGC GACTCCGATT GCTGATGTTG ATGCTTATCT TTATTTACAC
AAATCATTAC GTAGTAAAAA ATCAATCAAG GAATTGATTC CCTATCAAAT CGGTGTTGTA
GCAGGCTCAT ATCATGAAGC GCAGTTACAA CGAATGGAGT CTAAATTAGT TTTAAAGCGT
TATGAGAGTC GTGAAAAACT GCTTGCAGGC GTGGCCTCCT CAGAAATAGT GGTATTCGCT
GGATTAGAAG GTTACTTGAA AGATCCTGCA TCATCCCAAG ATATTTCGGC TAATTTCCCT
AATACAGCTC GCATAAAAAT TAAAAGTGTC CAGTTTGTCC CCGCGACAGT TAAAGGTAAC
CAAGCATTAG TCGATAAGAT TAATCGCGGT TTTATGGGTC TAGATCCTCA GTTTATCCAG
CAGACTGAAC GGCGTTGGTT GGGGATCCAT AGGCAAAAAT CTGGGTTGAT TATTGCTATG
CAACAGGGTG TTGAACCCTT TGTTGATCTC GGTGTTGATG GCTTACCCCA TGGTTTGTAT
GTAGATATGT GGAAATTGTG GTCCGAAAAA ACGGGGATTG ATATTGATTT TATCACCGGT
GACATGAATG CCAGTGTTGA TGATGTACGT CGTGGTCTAG CGGATGCACA TATTGGTTAT
CCAGAGAGTG ATGACTTAAA AACTGGACTT ACCCGAGCCT GGCCTCTCTA TACAGTAAAG
AGTCGACTGT TTATTTATCA GCAACAATTA AATGATGTAT CCCAATTAAA GGGCAAACGG
ATCGGTGTTG TACCGACAGC ACCTTATTTG GTCTCACTTA GGCAGGCTTT GCCTGATGTG
TCTTTACGCT ATTATGACAG TATGGATGCA ATGGTGACAG CCGCCAGAAC TGGTGAAATT
GTTGGCTTTG TTGCAGCAGG GGCTTGGACA TCTCATTACC TACTGCTTAA TAAAGGCTGG
TCTGACTTCC ATCAATATCC CGGCTTAGCG TTTTCGACCA ATATCTATGT GCTTACTCGC
AGTGATGATC CTGGACTTAC GCAACGAATT GAAAATGGTT TTAACAGTAT AACTCCCAAG
GAATTTGCAG ATATTGAGCA TAAATGGATG CTCAACCCTC AGGATCATAT CTTCAATCAA
ACGGAGCGTA ACCGCATTAA TTTAACGGCT ATAGAGCAAA CCTATCTTGA AAGTTTGGCT
GAAGTGCGTA TGGGTTATCT TAAACATTGG CCACCCATGG AGTTTACGGA TGAACAAGGG
GAGTTTGCGG GTATTAATAG TGATATTGCG CGGCTGTTAA AAGAAGAATT ACACCTTAAG
CTGACTCCCA TTGCTTTTGA TGACTGGCAT GCGTTAATTC AAGCACTGCA AAAAGGCGAT
ATTGCTCTTG CAGGCAGTGT AGCCAAAACG GCTGAGCGAC AACAACGATT ACTGTTTAGC
GACCCATATT GGCCATCACC TTGGGGGTTA GTCTCACAAC TCGAGCAGGT TTCTGTGTTT
AACATCGCTC AGTTAGCAGG GCAAAGAGTC GCTGTGGTTG AAGGCTATCA TTTGGTAGCG
CAATTAATGG CATTACAGCC ATCACTTAAA TTGGTGCTAG TGGCGGACAC TAAAGCAGGG
GTGAGTGCAG TGGCAAATGG TCATGCGGAG GTGTTTATTG ACAAAGTGGT CACACTGGCC
TCTGAGCTTA AAGGTGGGGA GTTTCCCACT CTCAAAATGT CGCTATTAAG TGATTTGGCC
GATCAACATA GTCATATTGG GGTCAATCCG GAATTTGACC CCTTAGTGCC ACTGATTAAT
AAAGCGTTAG CTATCATCGA TAATCAACGT CAACAACAGA TATATTCCCA CTGGGTCTCA
TTTACGGTTT CAACGGATAA CAGCCATTAT CTTCAATGGA TCCGCTACTT ACTGTTCAGT
GCCGTAATAT TATCTATTGT TATGATAGCG GTGTTGGCGG TCAATAGACG TTTAAACCTT
GAGATAACAC GGCGAATTTC AGCGGAGAAA CGGTTACAAC ATGTTGCAAA CCATGATGTA
TTAACCCAAT TACCTAATCG CGCGTTGTTA GATGACCGCT TAGCTCAAGC GCTATTATCA
CATCAACGAG ATCAAGCCTA CTTTGCTCTG TTATTTATTG ACTTGGATGA GTTTAAGCAA
ATTAATGATC AGCATGGTCA CCCAATAGGA GATTCAATAC TGACACAGGT AGCACAAATT
TTACTTAGTT CAGTGCGAAA CTCTGATACC GTGGCACGAT TTGGCGGCGA TGAGTTTGTG
ATCCTACTAA ATCGTGTGCA AGATCTCGAT GCCGCGACCC AAGTTGCTGA TAATATCCTG
CAGTCTCTTT CCTCGCCTTT GCTCATAGAA GGACAAACGG TGAGGGTTGC TGTCAGTATT
GGTGTCGTAC TTTATCCCCG AGATGGTGAT ACTGCAATTG GGTTGTTGAA AAAGGCTGAT
CAGCTAATGT ACCAAGCCAA AAGTAGTGGG GGACGATGTT ACCGTATTTC TTGA
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| Protein sequence | MKFVVYLIVI LCSYLLSITG QASPLPNEPL IIVMGEDSFP YQYVDSEGEP TGLLVDLWKE
WAKQTHTEVV FVARHWNESL TQLQKGKAHA HLGMGITPER QQLFDFATPI ADVDAYLYLH
KSLRSKKSIK ELIPYQIGVV AGSYHEAQLQ RMESKLVLKR YESREKLLAG VASSEIVVFA
GLEGYLKDPA SSQDISANFP NTARIKIKSV QFVPATVKGN QALVDKINRG FMGLDPQFIQ
QTERRWLGIH RQKSGLIIAM QQGVEPFVDL GVDGLPHGLY VDMWKLWSEK TGIDIDFITG
DMNASVDDVR RGLADAHIGY PESDDLKTGL TRAWPLYTVK SRLFIYQQQL NDVSQLKGKR
IGVVPTAPYL VSLRQALPDV SLRYYDSMDA MVTAARTGEI VGFVAAGAWT SHYLLLNKGW
SDFHQYPGLA FSTNIYVLTR SDDPGLTQRI ENGFNSITPK EFADIEHKWM LNPQDHIFNQ
TERNRINLTA IEQTYLESLA EVRMGYLKHW PPMEFTDEQG EFAGINSDIA RLLKEELHLK
LTPIAFDDWH ALIQALQKGD IALAGSVAKT AERQQRLLFS DPYWPSPWGL VSQLEQVSVF
NIAQLAGQRV AVVEGYHLVA QLMALQPSLK LVLVADTKAG VSAVANGHAE VFIDKVVTLA
SELKGGEFPT LKMSLLSDLA DQHSHIGVNP EFDPLVPLIN KALAIIDNQR QQQIYSHWVS
FTVSTDNSHY LQWIRYLLFS AVILSIVMIA VLAVNRRLNL EITRRISAEK RLQHVANHDV
LTQLPNRALL DDRLAQALLS HQRDQAYFAL LFIDLDEFKQ INDQHGHPIG DSILTQVAQI
LLSSVRNSDT VARFGGDEFV ILLNRVQDLD AATQVADNIL QSLSSPLLIE GQTVRVAVSI
GVVLYPRDGD TAIGLLKKAD QLMYQAKSSG GRCYRIS
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