| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1917 |
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| Symbol | |
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| ID | 5078537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2195123 |
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| End bp | 2198209 |
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| Gene Length | 3087 bp |
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| Protein Length | 1028 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640499078 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001183439 |
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| Protein GI | 146293015 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATAATT TTTCACGGCT CCAATTTATT GTAGTTGCAG TTGCAAGCTA TGCTCTCCTT
GCTTTAGGTT GGATATACTT TTCAGATCAA TTATTACTTT TTATTACGGA TCAACAGACT
GTTTTCCGTT TTTCCCTTGC CAAAGGCGTG TTTTTTGTAC TGACATCCGC ATTGGTTTTT
TTGTTTGTCT TGAATGCCGT GCCAGATCGC CATATTGCGC CCTCACATCG CGCCATTGAA
ATCACTTTCT CTCGTTCTGT CTTTCTCGGT CAAAGTCATT GGTTCCGTTA TGGAATTGCC
GTACTTTTCC CATTGTTAAC GCTATGGTTT GCCCATTATT TAACCCTTGA ATTACAAGCT
CGGTTGCTAT TATTGCTTTT TACATTACCT ATATCCCTAA GTGCGATTAT GGGAGGATTT
GCCCCAGGTT TATTAGCTAC ATTAATTTCG ACTTTGTGTG TGTACTTTTT GGTTTCGAAT
GTGGAAAAGT CACCGCTTGA TATGATGCTC AGTTGGCTAC CGTTTGTTAG TTTAAGTGTG
AACGGCATTC TTATTAGTGG TTTAAGTGGT TATCTAAGAG CCTCATTACG AAAATCCGAC
TTAAATCATC AGCTCCTTGA ATCCATGGTT TCACAAACAA CAGATGCCAT TTTTGTGAAG
GATTTACAAG GGCGCTATGT GGTTGCCAAT CAAGGTGCCG CAGCGTTTGT GGGTAAATCA
ATGCAGGAAA TGATTGGTCA AAATGATGAT GCATTATTTG AACCCATATC AGCGGCATTA
ATCCATCAAA AAGATGAGGC TGTACTGAAA GAAAAGAAAG TCACCACACA TAAGGAACAC
TTACAGCTAA AGAGTGGTTT AGCTGTATTT CAAGTCACAA AAGGCCCTGT TCTTGATTCT
AAAGGTGAAG TTCGTGGTCT CTTTGGGATT GCAAGGGATA TTACCGTACA GGAGCAAAGT
GCTGAATTGA TCCGTAAGAG TGAGGCAGGA CTAAGGCAAG CCCAGCAATT GTCAGGTATT
GGTAGCTGGG AGTGGGATCT TGTGACCAAT ACCCATACTT GGTCTGAGCA GGTTTTTGAA
ATCTATGGAT TATCACCAAA AAAAGCACTG GACATTGAAC AGGCACAGTC ACTGTTTACC
CCTGAAAGTT GGCAAAAGCT TAATGATGCC GTAAGCCAAT GTCTAGACAC TGGCGAACCC
TATGAATGTG AAGCTGAGTT TTATCGTGCT TATACATCAC CCTGTTGGAT TAAGACTCGG
GGACAAGCAA CGCGGGATGA ACAAGGACGC ATCATTAAGT TACAAGGTAC AGTGCAGGAT
ATTACCCAAG CTCGCCTGCT TCAACAGCAA ATAGCAGCGC AAACTGCACA GTTACAACGA
GTCATTCAAG GTTCGGATCA AGGTTACTGG GATTGGAATG TAACGACGGG CGAAGTTCAA
ATCAGTCCGC GATTTGAAGC CATTTTAGGG TATCAAACCG GTGAGATGCA GCTTAAAGCG
ACAAACTGGG CGCAATTTGT TTGCCGCGAA GATCAACGTG AAGTGAAAAA AGTGGTGTTA
CAACATTTAC GGCACCTCAC TCCGAGTATT GAACTTGAAG TGAGATGTAA AAAGAAATCC
GGTGAACTTT GTTGGGTACT TTGCAAAGGC GGCATAGTAG AGGTTGATAG TAAAGGTCGC
GCTTTGATGA TTTCAGGAAC CCAAGCGGAT ATTACCCAAC TTAAAAATCA CGAAGCTGAA
TTAGATAAGG TTGCAAATTA TGATGCCTTA ACGGGATTAC CTAACCGAAG ATTATTACTT
GATCGATTTA AACAAGCGAT ATCGAGAGTA AACCGTGATG GCAGGCTATG CGCAGTCTGT
TTTCTCGATC TGGATGGCTT TAAAGCCGTT AATGATCATT ATGGTCATGA TGTTGGCGAT
CAACTTTTGG TCGCAATAGT GGACAACCTT TCTAAGATCA TGCGTGAGCA AGATACATTA
GCGCGAGTTG GTGGTGATGA ATTTGTGGCA CTATTTGATA TTTGTTCAGA GGCGGAATGT
ACCCAAGTGC TTGAGAGAAT GTTATGTGCA ATAGATCAAA CTGTCTTGAT TGGGGATAAA
AATTTGCGCC TAAGCGCCAG CATTGGGGTG AGTTTATATC CAGAAGATAA TGTTGATCCT
GATATTCTGT TACGCCATGC CGACCATGCT ATGTATATGG CGAAAGCGGC TGGGAAGAAC
TGCTTTCAAA TGTTTGACCC TGACGTTGAT CGTAAGTTGC TTGCTCAACG AAAATGGTTA
GAAGAGCTCA AATCAGCCTT TGCGAAGCGT GAGTTTGTGC TTTTTTATCA ACCCAAAGTG
AATCTTGCCA CAGGAGAAGT GATCGGAGCC GAAGCCTTGA TCCGTTGGTT ACACCCACAA
CGTGGTCTAT TATCACCCAG TGTATTTTTG CCTGATATTG AAGGGAGTGA ACTTGAAATC
CCGCTGGGTG AATGGGTGAT CAACACCGCT ATAGCACAAA TCCAGCGTTG GTATCGTAGT
GGAAAAAATA TCAATATCAG TGTGAATGTG AGCGCCAGAC AGTTACTGGC GGATCACTTT
TATGATTTCC TAAAACAAAC ATTAGCTAAT TTTGCTGATG TGAATACATC CTCCCTTGAG
CTAGAGATTC TAGAAAGTGC TGCAATTAAA GATATGACGC TAGCGATTGG CATTTTGAAA
GAATGTGCCA GTCTTGGCGT GCATTTTTCC CTTGATGATT TTGGTACAGG TTATTCTTCT
TTAACTTACC TACGCCAATT ACCCGTCTCA GCCCTTAAAA TCGATCAAAG TTTTGTGCGT
GATATGTTAG TTGACCAAGA TGATTTAAGG ATAGTCGAAG GTGTAATTCG CCTTGCAAGT
GTGTTTAATT TAGCCGTTAT CGCTGAAGGG GTTGAAACCA TTGAGCACGG CAGAGTACTT
GCGACACTGG GATGCCAGAT GTGTCAAGGC TATGGAATTG CAGTTCCGAT GACGGCAAGT
GATTTTATGG ACTGGTATGA TAATTGGCCT ACACAATATC AACAGATTAA AAATGAGTTT
AAACATATGA ATGAGCAAGA GTGCTAA
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| Protein sequence | MYNFSRLQFI VVAVASYALL ALGWIYFSDQ LLLFITDQQT VFRFSLAKGV FFVLTSALVF
LFVLNAVPDR HIAPSHRAIE ITFSRSVFLG QSHWFRYGIA VLFPLLTLWF AHYLTLELQA
RLLLLLFTLP ISLSAIMGGF APGLLATLIS TLCVYFLVSN VEKSPLDMML SWLPFVSLSV
NGILISGLSG YLRASLRKSD LNHQLLESMV SQTTDAIFVK DLQGRYVVAN QGAAAFVGKS
MQEMIGQNDD ALFEPISAAL IHQKDEAVLK EKKVTTHKEH LQLKSGLAVF QVTKGPVLDS
KGEVRGLFGI ARDITVQEQS AELIRKSEAG LRQAQQLSGI GSWEWDLVTN THTWSEQVFE
IYGLSPKKAL DIEQAQSLFT PESWQKLNDA VSQCLDTGEP YECEAEFYRA YTSPCWIKTR
GQATRDEQGR IIKLQGTVQD ITQARLLQQQ IAAQTAQLQR VIQGSDQGYW DWNVTTGEVQ
ISPRFEAILG YQTGEMQLKA TNWAQFVCRE DQREVKKVVL QHLRHLTPSI ELEVRCKKKS
GELCWVLCKG GIVEVDSKGR ALMISGTQAD ITQLKNHEAE LDKVANYDAL TGLPNRRLLL
DRFKQAISRV NRDGRLCAVC FLDLDGFKAV NDHYGHDVGD QLLVAIVDNL SKIMREQDTL
ARVGGDEFVA LFDICSEAEC TQVLERMLCA IDQTVLIGDK NLRLSASIGV SLYPEDNVDP
DILLRHADHA MYMAKAAGKN CFQMFDPDVD RKLLAQRKWL EELKSAFAKR EFVLFYQPKV
NLATGEVIGA EALIRWLHPQ RGLLSPSVFL PDIEGSELEI PLGEWVINTA IAQIQRWYRS
GKNINISVNV SARQLLADHF YDFLKQTLAN FADVNTSSLE LEILESAAIK DMTLAIGILK
ECASLGVHFS LDDFGTGYSS LTYLRQLPVS ALKIDQSFVR DMLVDQDDLR IVEGVIRLAS
VFNLAVIAEG VETIEHGRVL ATLGCQMCQG YGIAVPMTAS DFMDWYDNWP TQYQQIKNEF
KHMNEQEC
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