Gene Sputcn32_1862 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1862 
Symbol 
ID5080173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand+ 
Start bp2129059 
End bp2129700 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content45% 
IMG OID640499020 
ProductTetR family transcriptional regulator 
Protein accessionYP_001183384 
Protein GI146292960 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGTC GATCCGATAC AAAAACTAGA ATACTTGATG CCGCAGAAAA ACTGTTCGCC 
GAAAGGGGCT TTTCTGAGAC CTCCTTGCGA CTTATTACCA GCAAAGCGGA AGTGAATCTT 
GCATCAGTCA ATTATCATTT TGGTTCTAAA AAAGAACTGA TCCGTGCTGT TTTGGCTCGA 
TATTTAGATG TGTTTATGCC TGCTGCTTCA ACAGAAATTA AACGCTTAGA TGCCATACCT 
GCACAAGCGA CTTTAGAAGA GATTTTATCG TCGTTGGTCG CGCCGCTGTT AGAGCTTAAT 
CAGTTACGAA CGGAAGGCAC GACGATTTTT CTGCAGTTAC TTGGGCGTGG CTATATCGAA 
AGTCAAGGGC ACCTACGTTG GTTCATCACG ACCCACTATG GTCAGCATTT AGATACCTTT 
GTGAGTGCTG TGTCAGCAAG TGCGCCACAT ATTCCTCCCG CAGAAATGTT TTGGCGCTTA 
CACTTTACCC TAGGCACCAT CGTATTCACT ATGGCATCTG CTGATGCGTT AAATGATATT 
GCGAAAGCTG AATTTGGCGA GCATAACGAT ATCGAAGCGG TTATCCGTAA AGTGATCCCT 
TATATGGCGG CTGGTGTGTC AGTCCCTGTT TCACCTCAAT AA
 
Protein sequence
MASRSDTKTR ILDAAEKLFA ERGFSETSLR LITSKAEVNL ASVNYHFGSK KELIRAVLAR 
YLDVFMPAAS TEIKRLDAIP AQATLEEILS SLVAPLLELN QLRTEGTTIF LQLLGRGYIE 
SQGHLRWFIT THYGQHLDTF VSAVSASAPH IPPAEMFWRL HFTLGTIVFT MASADALNDI 
AKAEFGEHND IEAVIRKVIP YMAAGVSVPV SPQ