| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1858 |
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| Symbol | |
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| ID | 5080169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2124679 |
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| End bp | 2126862 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640499016 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001183380 |
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| Protein GI | 146292956 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.657583 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGCGAC GTCAGCATCA GCATTTATTA GAGTCTTTAG TGCATTCAAC TGCAAAACAG
CAGGGGGATT TTGCTAAGAC CGCAGAATTA GCGACAGAGT TGTTGTGTCA GAATTTAACG
GTTTCTTCAG TTTCTGTATG GACGTTCTCT CCAGATCAAC AAAGTCAATC TCTCGTAGCA
CAATTTGGCG CTATGATGTT GCAAGATATC CATAGACCTA AATTATTGCA GGCGTGCCCT
CGTTATTTAT ATGAGCTTAA AACCCGTCGT CATATTGATG CGGGTAACAC GTTGATCGAT
CCGCGTCTGA GTGAACTATC CCAAGTGTAT TTTAATCCTC GACAGGTATT TTCCTGCCTT
GATGTGGGAA TTCGCATTAA TGGACATCTT GAAGGTGTTC TCTGTATTGA ACGAACCCAA
GTTACACCCC ATTGGCATGA CAGTGAGATA CATTTGGCTT GTCAGATGGC CGATCAGCTT
GCATTAACCC TTGCCACAAA ACACGCTTAT GATAAAGAAG AGCGGCTAAG CCTATTTCGC
AGTGCAACAG AACAATCCCA ACAAATGAGT ATGTTGATCA ATTTGCATAC TGAAAAAGTG
GAATATGTGA ATCAAGCACA TGGTGAGATC ACTGGGCTAA CGCGTGAGCA AAGCATTGGT
AGTCATTTGC GAGAGTTAAC CTTCTTTAAG CAACATCCCC AACTCGCAGA GGAAACGCTC
GCACAAATCT TTAGGGGAGA GCAGGCAAAA GGTGAAGTAC AATTTCGCCG CGCAGATGGC
AGTTATTATT GGCTTAAGTA TGTGGTTAGC CAATTTATTA CTGAACGAGG AAATCACTAC
GCCTTAGTGT CTGGTGAAGA AAGCACGGAT GAGCATAATT ACAAAATAGA ACTAGAGCGG
CTTGCTTGGC GTTGTAGTTT AACGGGATTA CATAACCGCA GTCATTTTAA TCGAGTGTTA
GAGCGTACCA GCAAAGGGCT GCTCTTATTA GTTGATCTTG TCGGCTTTAA ACGTTTTAAC
GATACCTATG GCCATGAACA TGGTGATAGT TTATTAATCG AAATTGCGCG CCGTTTGAAA
CATTTCTCTG AGATCAATAA AGCCACGGAA ATTGCCCGCG TAGGGAGTGA TGAGTTTGTG
GTGCTGCTGA CGGATGATAA TGCCGTCTAT GATCTTGATT ATTTCAGTAC CCGTTTATAT
CAACATCTAT CAGCGCCAAT GTTAATCGGT CGAGAGCAAA TAGAACCTAA ACCTGCTTTA
GCGGTGGTGG ATATTGCCTC CGTTGCCAAT TTATTTGCGC CACTTACCTG TGCTGATATT
GCAGTGCAAT ACGCTAAGAA GAAAAAAGGT ACTTCGATTC AAGTGTTTAA TAGCACTTTG
CTCAGCGCTT TTAAGGAAGA TGCACAGATA GAGCGTGATT TACACAGTGC CATTCGTGGA
CGTCAATTTG AACTTTATTA CCAACCGCTT AGGGATCTTG GATTACAAAC CTATATCGGT
GCCGAAGCGT TGATCCGTTG GCATCACCCC AAAAAAGGGG TTCTATATCC CGGTGCTTTT
ATTGATATTG CTGAGCAGTC AGGAATGATC AATGCGATTG GTAGTTGGGT ACTGGAGGCC
GCTTGTCGGC AACTCAATCT TTGGCAGCAT CATAATGCCG ATCTGACTAT GCATGTAAAC
GTCTCTGCAC GGCAGTTCTT TAGCGGTAAT TTATACGAAC AAGTATGGCA ATTACTTACC
CGTTATCGGT TAAAGCCTAA AACCTTAATC TTAGAAATTA CTGAAACAGA GCTGATGGGG
GATATCCGTC ATGCCACGTT ATTATGTCAA GAGTTAGCTG AATTAGGTGT TGGACTTGCT
ATTGATGATT TTGGGACGGG TTATAGCTCG ATGCGTTACT TAAAGCAATT CCCCATTAGT
AAGTTGAAAA TTGACCGTTC CTTTATCTCC GATCTCACCA TTAGCCGTGA AAGTCGTGAA
ATTGTTTCGG CGATTATCGC TATGGCGAAT GCGTTGAATA TTTCTTTAAC GGCAGAAGGG
GTCGAAACCA TTGAACAAGA GGCCTTTTTG GCAAAAAGTT GCTGCCATCA GGCTCAGGGA
TATTTATACA GTCCTGCACT GAGAGAACCT GAATTTGCTC AATTTTTACT TTCAGCAAAT
CGTTCTTCTG TACTGACACA TTGA
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| Protein sequence | MKRRQHQHLL ESLVHSTAKQ QGDFAKTAEL ATELLCQNLT VSSVSVWTFS PDQQSQSLVA
QFGAMMLQDI HRPKLLQACP RYLYELKTRR HIDAGNTLID PRLSELSQVY FNPRQVFSCL
DVGIRINGHL EGVLCIERTQ VTPHWHDSEI HLACQMADQL ALTLATKHAY DKEERLSLFR
SATEQSQQMS MLINLHTEKV EYVNQAHGEI TGLTREQSIG SHLRELTFFK QHPQLAEETL
AQIFRGEQAK GEVQFRRADG SYYWLKYVVS QFITERGNHY ALVSGEESTD EHNYKIELER
LAWRCSLTGL HNRSHFNRVL ERTSKGLLLL VDLVGFKRFN DTYGHEHGDS LLIEIARRLK
HFSEINKATE IARVGSDEFV VLLTDDNAVY DLDYFSTRLY QHLSAPMLIG REQIEPKPAL
AVVDIASVAN LFAPLTCADI AVQYAKKKKG TSIQVFNSTL LSAFKEDAQI ERDLHSAIRG
RQFELYYQPL RDLGLQTYIG AEALIRWHHP KKGVLYPGAF IDIAEQSGMI NAIGSWVLEA
ACRQLNLWQH HNADLTMHVN VSARQFFSGN LYEQVWQLLT RYRLKPKTLI LEITETELMG
DIRHATLLCQ ELAELGVGLA IDDFGTGYSS MRYLKQFPIS KLKIDRSFIS DLTISRESRE
IVSAIIAMAN ALNISLTAEG VETIEQEAFL AKSCCHQAQG YLYSPALREP EFAQFLLSAN
RSSVLTH
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