| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1852 |
|---|
| Symbol | |
|---|
| ID | 5080160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2118525 |
|---|
| End bp | 2120531 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640499007 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001183374 |
|---|
| Protein GI | 146292950 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000148826 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGAAT CTGTTTTTCA GCTTGAATCG CAATTTGCTC CCGCTGGCGA TCAGCCTGCG
GCCATTACAA AGTTAGTTGA TGGTTTAGAG TCGGGACTTG CCTGCCAAAC CTTACTTGGG
GTCACGGGAT CGGGTAAGAC GTTTACGATT GCCAATGTCA TTGCCAAATT AGGACGGCCA
ACCATTATTA TGGCGCCCAA TAAAACCTTG GCAGCGCAGC TTTATGGCGA GATGAAAGAG
TTTTTCCCCC ATAATGCGGT TGAGTATTTT GTCTCTTACT ATGATTACTA CCAGCCTGAA
GCCTATGTGC CCGCATCAAA TACTTTTATT GAAAAGGATG CCTCTGTTAA TGCTCACATT
GAACAGATGC GTTTGTCGGC CACAAAAGCC TTATTAGAAC GTAAAGATGT AGTGCTGATT
GCCTCTGTGT CGGCTATTTA TGGTTTGGGT GATCCCGATT CCTACTTGAA AATGTTGTTG
CATCTACGCC AAGGTGACAG TTTGGGACAA CGCGATATGT TACAGCGTCT TAGTGAGCTG
CAATATACGC GTAATGATAT TGAATTGCAG CGCGGTACGT TTCGCGTGCG TGGTGAAGTG
ATTGATATTT TTCCAGCAGA TTCTGATCGT TATGCAATTC GGGTTGAGCT GTTTGATGAT
GAAATTGAGC GTTTAAGTGA ATTCGACCCT TTAACGGGGC AAATTATCAA ACGTATTGCA
CGTACAACCG TTTACCCTAA GACTCACTAT GTCACGCCAA GGGAAAAAAT CCTTGAGGCA
ACCGAGTTAA TTAAGGAGGA ATTGCGGGAG CGTAAACAAT ATCTACTGGA TAATAATAAA
CTGATCGAAG CCCAGCGGAT CCATGAGCGG GTGCAATACG ATGTGGAGAT GATGGTCGAA
TTGGGCTACT GCTCTGGTAT TGAAAACTAC TCGCGCTATT TGTCTGGCCG CGCACCGGGG
GAAGGGCCAC CAACCTTGCT CGACTACTTA CCTGCCGATG GTTTACTCAT TATTGATGAG
TCCCATGTGA CTGTGCCGCA AATTGGCGCT ATGTATAAAG GCGATCGTTC CCGTAAAACC
ACCTTAGTGG AATATGGCTT TAGATTACCA TCGGCATTAG ATAATCGGCC GCTCAAATTT
GAAGAGTTTG AGCAGTTAAT GCCGCAAACG ATTTATGTGT CGGCGACGCC TAGCCTCTAT
GAGCTGGAAA AGAGTGAAGG AGAGATAGCT GAACAAGTTG TCCGGCCCAC AGGATTGCTC
GATCCCGAGC TGGAAGTACG CCCTGTGGCG ACACAGGTCG ATGATTTATT ATCTGAAATA
GCCAAACGTG TCGCGGTCAA TGAGCGGGTG TTAGTCACCA CACTAACAAA GCGCATGTCG
GAGGATTTGA CTGAATACCT CGACGAACAT GGGGTAAAAG TGCGTTATCT GCATTCGGAC
ATAGACACAG TTGAACGGGT TGAGATCATC CGCGATCTGC GCTTAGGTAA GTTTGATGTG
TTGGTCGGCA TCAACCTATT ACGTGAGGGC TTAGATATGC CAGAAGTGTC ATTGGTGTGT
ATTTTAGACG CTGATAAAGA GGGCTTCTTG CGCTCTGAAC GCTCGCTTAT CCAAACCATT
GGCCGCGCTG CACGTAACGT CAATGGTAAA GTGATCCTCT ATGCCGATCG CATCACTAAT
TCAATGGCTA AAGCGATGGA GGAAACTGAC CGTCGCCGCG AGAAGCAACG TGCTCATAAT
TTGAAAAACG GTATAGTCCC CAAAGGCGTC GTTAAGCGTA TTACCGATGT GATGGATGTG
GATGATGGCC GCGACAGTAA AGCTGTGTAT GGCAAAGTGG CTGAGCCTAA GTCCCATTAC
CATAAAGCCG ATGCGGCAGA GTTGAGCCAT CAAATCGATC AACTAGAGAA AAAGATGCAC
GAACATGCGC GCAATTTAGA GTTTGAACAA GCGGCGGCAA TGCGTGATGA AGTAAAACAT
CTGCGTGAAT TGTTGATCAA AGCGTAG
|
|---|
| Protein sequence | MSESVFQLES QFAPAGDQPA AITKLVDGLE SGLACQTLLG VTGSGKTFTI ANVIAKLGRP
TIIMAPNKTL AAQLYGEMKE FFPHNAVEYF VSYYDYYQPE AYVPASNTFI EKDASVNAHI
EQMRLSATKA LLERKDVVLI ASVSAIYGLG DPDSYLKMLL HLRQGDSLGQ RDMLQRLSEL
QYTRNDIELQ RGTFRVRGEV IDIFPADSDR YAIRVELFDD EIERLSEFDP LTGQIIKRIA
RTTVYPKTHY VTPREKILEA TELIKEELRE RKQYLLDNNK LIEAQRIHER VQYDVEMMVE
LGYCSGIENY SRYLSGRAPG EGPPTLLDYL PADGLLIIDE SHVTVPQIGA MYKGDRSRKT
TLVEYGFRLP SALDNRPLKF EEFEQLMPQT IYVSATPSLY ELEKSEGEIA EQVVRPTGLL
DPELEVRPVA TQVDDLLSEI AKRVAVNERV LVTTLTKRMS EDLTEYLDEH GVKVRYLHSD
IDTVERVEII RDLRLGKFDV LVGINLLREG LDMPEVSLVC ILDADKEGFL RSERSLIQTI
GRAARNVNGK VILYADRITN SMAKAMEETD RRREKQRAHN LKNGIVPKGV VKRITDVMDV
DDGRDSKAVY GKVAEPKSHY HKADAAELSH QIDQLEKKMH EHARNLEFEQ AAAMRDEVKH
LRELLIKA
|
|---|
| |