| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1800 |
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| Symbol | |
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| ID | 5079261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2044164 |
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| End bp | 2046413 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640498950 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001183323 |
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| Protein GI | 146292899 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGAAG GCACTAATGT TATGGGACGA CTTTTCGAAT CCTCACTTAA ACTAGATCAC
GATGTTAGCT TAGATTGCTA TAGCGGCATT TTATCTATGT TGTTAAATGG TGCGCCTCTA
GGTGAGATTC TTCACGCGCT CGTCCTTAAA ATTGAAGCTC AAAAAATAGG GACAAAGGCT
TCCGTCCTAC TGTTGAGTGA TGATGGTAAA CGGTTACTTT TTGGTGCTGC CCCCCACTTG
CCAGATAACT ATAACCAAGC AATTCATGGC ATTGAAATTG GCCCAGACGT AGGCTCCTGT
GGTACTGCGG CCTACTTGGG GGAACGTGTT ATTGTTGAAG ATATCGCGCA CCATCCATTT
TGGGAAAAGT TTAAAGCAAT TCCTCTCAGT GCGGGCCTTA AATCCTGTTG GTCTGAACCC
ATCAAAGATA ATCATGGGAA AGTACTCGGG ACTTTCGCCA TGTATTATGA CGTCATAAAA
TCACCTATGC CGCAGGATTT AACCTTGATA TCGGAAGCTG CAAGATTGGC GAGCCTTGCG
ATTGAACGTA GCCGTTCGAT GGAGTTTCAG CGTTTAGCGG TGAAAATATT TGATCGCTTG
CCTTTAGCAC TTGTGATCAC CAATTCCCTC GATGCCGTGT TATATGCAAA TGCAGCATTT
AAGCAAATAG TACAACCACA AACAGTAGAA TCATCTAATT TTCACCCAAA AACCTTTTTG
TCTCAGTCAG AACCCCATGA ACTTGATATG CTTTTTCAGC ACCTATCTGC AGGAAAAATG
TGGCAAGGGG AATTAGTTGG ACTCAGGGGA AATGGTGAAA CCTTCTACCT TGATCTTACT
GTAACGGTAT TTCGTGAGCC TCACAGCAAT TACAATGGCT TCGCTTGGTT ATTTTCCGAT
ATCAGTGAAC GTAAAAAAGC CGCACAACTA ATTAAGTATC AAGCGAATAA TGATTCACTT
ACAGGGCTTG CAAATCGTAA TGCCCTCTTT AGACAAATCC AAACCTTAAT CACTTCTGAC
TGTTTAACGC CGGGCTTTAG TTTTATGTTG ATGGACTTAG ATAACTTTAA GCAAGTCAAT
GACACCTATG GGCACGATAA GGGCGATATG TTGTTGTTAC AGGTTGTTGG ACAGATAAAA
ACCTGTTTAG ACAGCAGTAT AATGTTTGCG CGTTTAGGTG GTGATGAGTT TGCCTTACTG
TTACCCGGGG TTGTTACACA AAAAGCACTC TCACAATTGG CCGAAAAAAT CATTAAAAAT
GTCTATCGGC GTTATGAGCT ATCAAAGGAT AAAGGCGTTT ACAGTTCGGT TAGTATTGGA
ATTGCACGTT TCCCTGAGGA TGCACTTAAT TTGGAGCAAT TGCTTAATTG CGCTGACCAA
GCCATGTATA TCTCCAAGGC GAATGGGCGC AATCGGTATC ATTTCTTTAC TGAGCAAATG
CAGCAGAATG CCGAACGAAT AGCGAATTTA CATACATTGC TAAAGCAAGC CTTAGATCAA
CAAGCCTTTG AGCTCTATTA TCAGCCAATC GTTAATGCGA CAACGGGGTT GATCGTGCGT
GCAGAGGTAC TATTACGCTG GCAACATGAA GGCCAGTTTA TTGCTCCAGA TGAGTTTATT
CCCATCGCTG AAAATAGTGG ATTGATTGTT GATATCGGTC GAAATGTCCG CCGATGTGCG
ATGCAAACGA TTAAGGAGAT GCAAGACCAT GGTTGGGGTA TTAGCTTAGC GGTGAATGTG
TCTACTTTTG AGTTCTGGTC CCATGAGTTG CAGGATGCAT TTTGTGACTC TTTTGCTGAC
ATAATTGAAG AATTAGGCTT AGTTGATTTT CCCTATGAAT TGATCACGCT GGAAATTACC
GAATCCTTAT TGATGAAACA ACATGTACAT TTAATCAAAG TGCTCAATGA ACTGCGTGCT
CGAGGTGTGA AAATATCCTT AGATGACTTT GGTACTGGTT ATTCCTCTTT ATCTTATTTA
GCGAATTTTC CCATAGATCA AATTAAGATA GATAAAAGCT TTATCGATAG ATTAGCAGAA
GGCGAACGCC ACGAGGCTCT GGTTGAGGCC ATAGTGCGCT TAAGTCATGC ATTAAATTTG
AGTGTGACTG CTGAAGGGGT AGAAACAGAG GCTCAGTTGA AGTTTGTGAT GGCAAATGAC
ATTCAAGAAA TTCAAGGTTA CCTCTATTAT CAACCTATGC CTAAGGCCGC ATTTTTTGAA
TTATTGGCTA AGCAAGCTAA GCCACATTAG
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| Protein sequence | MDEGTNVMGR LFESSLKLDH DVSLDCYSGI LSMLLNGAPL GEILHALVLK IEAQKIGTKA
SVLLLSDDGK RLLFGAAPHL PDNYNQAIHG IEIGPDVGSC GTAAYLGERV IVEDIAHHPF
WEKFKAIPLS AGLKSCWSEP IKDNHGKVLG TFAMYYDVIK SPMPQDLTLI SEAARLASLA
IERSRSMEFQ RLAVKIFDRL PLALVITNSL DAVLYANAAF KQIVQPQTVE SSNFHPKTFL
SQSEPHELDM LFQHLSAGKM WQGELVGLRG NGETFYLDLT VTVFREPHSN YNGFAWLFSD
ISERKKAAQL IKYQANNDSL TGLANRNALF RQIQTLITSD CLTPGFSFML MDLDNFKQVN
DTYGHDKGDM LLLQVVGQIK TCLDSSIMFA RLGGDEFALL LPGVVTQKAL SQLAEKIIKN
VYRRYELSKD KGVYSSVSIG IARFPEDALN LEQLLNCADQ AMYISKANGR NRYHFFTEQM
QQNAERIANL HTLLKQALDQ QAFELYYQPI VNATTGLIVR AEVLLRWQHE GQFIAPDEFI
PIAENSGLIV DIGRNVRRCA MQTIKEMQDH GWGISLAVNV STFEFWSHEL QDAFCDSFAD
IIEELGLVDF PYELITLEIT ESLLMKQHVH LIKVLNELRA RGVKISLDDF GTGYSSLSYL
ANFPIDQIKI DKSFIDRLAE GERHEALVEA IVRLSHALNL SVTAEGVETE AQLKFVMAND
IQEIQGYLYY QPMPKAAFFE LLAKQAKPH
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