| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1795 |
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| Symbol | def |
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| ID | 5079256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2040319 |
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| End bp | 2040810 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640498946 |
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| Product | peptide deformylase |
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| Protein accession | YP_001183319 |
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| Protein GI | 146292895 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.591266 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGTAC TCGATATTCT AACCATTCCC GATGAGCGCC TTAAACGTAA AGCGCAACCT
GTAAAAGATA TTGAAGCTGT TCAGGGATTT ATCGATGATT TAATCGAAAC CATGTATCAC
ACGGACGATG GTATCGGTTT AGCAGCAACT CAAGTCGGCA GTACAGATGC AATTATCGTG
ATCGATTTAT CTGACGGTCG CGACCAGCCT TTAGTGCTGA TTAATCCTGA GATTGTTGAA
AAGTCAGGTG AGTTCGTCGG TGAAGAAGGT TGTCTGTCTA TCCCAGGTTA TCGCGCTAAA
GTGTCACGTT TTGAAAAAGT TAAAGTGACC GCCTTAGACA GAACTGGCAA AGCTATCGAA
ATCGAAACCG ATGAGTTTTT AGCCATAGTG TTGCAGCACG AAATCGACCA TTTGCATGGC
AAAGTATTCA TCGAACATTT ATCCATGCTA AAACAACAAA TCGCCCTTAA AAAAGTGCGT
AAATACGCTT AA
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| Protein sequence | MAVLDILTIP DERLKRKAQP VKDIEAVQGF IDDLIETMYH TDDGIGLAAT QVGSTDAIIV
IDLSDGRDQP LVLINPEIVE KSGEFVGEEG CLSIPGYRAK VSRFEKVKVT ALDRTGKAIE
IETDEFLAIV LQHEIDHLHG KVFIEHLSML KQQIALKKVR KYA
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