Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1778 |
Symbol | |
ID | 5079237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 2024428 |
End bp | 2025324 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640498927 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001183302 |
Protein GI | 146292878 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000181213 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAATAA CCTTGAGGCA ACTGGCTGTA TTTGAAGCCG TAGCGCGAAG CGGTCAGGTT GCTAAAGCCG CGGAGCAAGT TAACCTTTCT CCCCCAGCGA CTTCTATGGC ATTGGCAGAA TTAGAAAAAC AGCTAAATGC TAGACTTTTT GAACGAATTG GCAATCGTTT ACAATTAAAT TCCCAAGGCA ATTTGTTACT ACCTCTGGCA ACGGATTTAT TACATAGAGT CGAGCAGATT GAACAAGCTT TTACTCAGCA AGATGGCGAT CTTATTGGGC ATTTAAGCGT GGGTGCTAGC TCGACAATCG GTAATTATTT ACTCGCCAAA GCCGCAGTGG CTTTTTGTCA GCAACATCTT CAAACCCACG TGGATGTCGC AATCACAAAT ACCCAAGATG TGATCCAATC GGTAGCACAA TTTCGTTCAG AAATGGGCTT TATTGAAGGC TATTGTACTG ATAGTCGATT GAAGGTTGAG GTGTGGCATA AGGATACATT ACTCGTGTTT TGTCATCCTG CGCACCCGCT TGCTGGCAAA ATCGTAAAAC CTGCCGCACT TAAAGGACAA TCTTGGGTGC TACGAGAAGA AGGATCTGGC ACTCGAGAAT ATTTTGTTAA TGCTGCCAAT GAGTTAGATA TGCGTCCCGA GGCTAAATTC TGCTTTTCTA CGCCGGATGC GATTAAACAT GCTGTCAAGC AAGGTGCAGG ATTAGGCGTA TTATCAGAGC TTGCTCTAGA TAAGGAGATA AGCCGAAAAG AATTGGCGAT GGTGACAGTT GAAGGGCTGG TCCTAGAGCG GCAGTTTTAT CGCATTACCC ATAAAAGCCG TCAAGCGACC TCTTTAGGGC AATCGTTTGT GCAGTTTTGC GGGAATTTCT TCAATATTGC TCACTAG
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Protein sequence | MRITLRQLAV FEAVARSGQV AKAAEQVNLS PPATSMALAE LEKQLNARLF ERIGNRLQLN SQGNLLLPLA TDLLHRVEQI EQAFTQQDGD LIGHLSVGAS STIGNYLLAK AAVAFCQQHL QTHVDVAITN TQDVIQSVAQ FRSEMGFIEG YCTDSRLKVE VWHKDTLLVF CHPAHPLAGK IVKPAALKGQ SWVLREEGSG TREYFVNAAN ELDMRPEAKF CFSTPDAIKH AVKQGAGLGV LSELALDKEI SRKELAMVTV EGLVLERQFY RITHKSRQAT SLGQSFVQFC GNFFNIAH
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