Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1740 |
Symbol | |
ID | 5079298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1987608 |
End bp | 1988222 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640498889 |
Product | sortase family protein |
Protein accession | YP_001183264 |
Protein GI | 146292840 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3764] Sortase (surface protein transpeptidase) |
TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.482207 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAGAC AGCAGACACG GCGAATTTTG CTAGTGGGAT TGTTATTGCT CGGCGGTACA TTGTTAGGAA AAGGACTCTA TATGCAAGCT AAAGCACATT TCGCACAATA TTTGATAGAA CAAGCATGGA CTAAGACTCT GGCTGATGGA CAATCCCACA AACCTTGGTC ATGGGCCGAT ACCTATCCTG TTGCTAAATT GTCTATTTAT CAAAACCATA AATTGACACA TTTTGATGAG ATTGCCGCAA ACGATAGCTT ATATGTGCTT GCGGGAGCGT CGGGACGTAA CCTTGCGTTT GGCCCAAGTT TAGTGTTATC CAGTGCGTCA GCAGGCCAAG TAGGGAATAC GGTTATTGCA GGGCATAGGG ACACGCATTT TGCGATATTA AATGGGATGA GTGTTGGACG AAAAATATCC CTACAAACGG CTTCGGGAAA AGACATTCTT TACCAAGTAG TGGCAACGCA GGTTGTGCAC GAGTCACAAA CGGAGTTTAT GGCACCTTCA GAAGATGAAA GACTCACCCT TATTACATGT TACCCTTTTA ATGACATTCA AGGCGGAGCC GAACTACGAT TTGTGGTACA AGCCGTGCCC GTTTTATCCT CGTAA
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Protein sequence | MSRQQTRRIL LVGLLLLGGT LLGKGLYMQA KAHFAQYLIE QAWTKTLADG QSHKPWSWAD TYPVAKLSIY QNHKLTHFDE IAANDSLYVL AGASGRNLAF GPSLVLSSAS AGQVGNTVIA GHRDTHFAIL NGMSVGRKIS LQTASGKDIL YQVVATQVVH ESQTEFMAPS EDERLTLITC YPFNDIQGGA ELRFVVQAVP VLSS
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