| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1719 |
|---|
| Symbol | |
|---|
| ID | 5079277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1959779 |
|---|
| End bp | 1960948 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640498868 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001183243 |
|---|
| Protein GI | 146292819 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCAC TCTACACCAG TCTTAATTTT GGCCTAGGCG AAGATGTCGA TATGCTGCGC
GATGCAGTGC AGGATTTTGC CGCGAATGAA ATCGCACCGA TTGCCGCGAA AGTGGATCAC
GACAATGCCT TTCCCAATGA ACTTTGGCCT GTGCTTGGAG GTATGGGACT GCTCGGCGTA
ACAGTACCCG AAGAGTTCGG CGGCGCGAAC ATGGGCTACC TTGCCCACGT CGTCGCAATG
GAAGAAATTT CCCGCGCCTC GGCCTCTATC GGCTTAAGTT ACGGTGCCCA CTCCAATCTG
TGCGTAAACC AAATTAACCG TAACGGTAAT GCCGCACAAA AAGCCAAATA CTTACCAAAG
CTCGTCAGCG GTGAGCATAT TGGCGCACTG GCTATGAGTG AACCCAATGC GGGTTCTGAT
GTGGTTTCGA TGAAACTGCA CGCCCGCAAA GAAGGCGACC GTTATATTCT TAATGGCAAC
AAGATGTGGA TCACCAACGG TCCCGATGCC AATACCTATG TTATTTATGC CAAAACCGAC
TTAACTAAGG GCGCCCACGG CATCACCGCC TTTATCGTCG AGCGCGGTTT TAAAGGTTTC
AGCCAAGCGC AAAAACTCGA CAAACTCGGC ATGCGCGGTT CAAACACCTG TGAACTGGTG
TTTGAAGAGG TAGAAGTGCC AGAGGAAAAC ATCCTTGGTG GCCTCAACAA TGGCGTCAAA
GTGCTGATGA GTGGCTTAGA TTACGAACGC GTAGTGCTCT CAGGCGGACC GTTGGGGATC
ATGAACGCCT GTATGGATAT CGTTGTGCCT TATATCCACG AGCGTGAGCA ATTTGGTAAA
TCAATCGGTG AATTCCAACT AGTACAAGGC AAGTTAGCCG ACATGTACAC CGGTATGAAT
GCCGCCAAAT CCTATGTCTA TAACGTAGCA AAATCCTGCG ATCGCGGTGA AACTACCCGC
AAAGACGCCG CGGGCGCCAT TCTCTACAGT GCGGAACTCG CCACAAAAAT GGCACTGGAT
GCCATTCAAT TGCTCGGCGG TAATGGCTAT GTCAACGAGT ACGCGACAGG CCGCTTACTG
CGCGATGCCA AACTCTATGA GATTGGCGCT GGCACCTCAG AAATTCGCCG TATGCTGATT
GGCCGCGAGC TCTTTAACGA ATCGAAATAA
|
|---|
| Protein sequence | MNSLYTSLNF GLGEDVDMLR DAVQDFAANE IAPIAAKVDH DNAFPNELWP VLGGMGLLGV
TVPEEFGGAN MGYLAHVVAM EEISRASASI GLSYGAHSNL CVNQINRNGN AAQKAKYLPK
LVSGEHIGAL AMSEPNAGSD VVSMKLHARK EGDRYILNGN KMWITNGPDA NTYVIYAKTD
LTKGAHGITA FIVERGFKGF SQAQKLDKLG MRGSNTCELV FEEVEVPEEN ILGGLNNGVK
VLMSGLDYER VVLSGGPLGI MNACMDIVVP YIHEREQFGK SIGEFQLVQG KLADMYTGMN
AAKSYVYNVA KSCDRGETTR KDAAGAILYS AELATKMALD AIQLLGGNGY VNEYATGRLL
RDAKLYEIGA GTSEIRRMLI GRELFNESK
|
|---|
| |