| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1704 |
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| Symbol | |
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| ID | 5079362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 1942770 |
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| End bp | 1943855 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640498853 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001183228 |
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| Protein GI | 146292804 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000249801 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA TTATTCTAAT AATCGCCATA TTGGCGTCAG CATGGTTTGG ATATCAAGCA
ATGCAACCCC AAGAGATAGC ACAAGCTAAG GTGAAATTAG TGCCAAATGT CGTGATAGCC
ACTGCAGAAA TTGCGCCTGT ACGCGATGAA GTGGAAGCGA TTGGCACTAA CAAAGCATAT
GAATCTGTGA CTATCACGCC TAAGGTGACC GATATGGTGA TGTCACTTAA CTTTGATGAT
GGTGATATCG TTAAGAGAGG GGATTTGCTC GTACAACTAC AAAATGCAGA GCAAATTGCC
AAAGTGAAAG CAGCTCAAGT AAAAGTGACT GATAATAAAA GGGAATTAAA TCGTATTAGT
TCGCTAGTGA CGAGCCGTAC TGTGGCGGAG TTAGAGCGAG ATCGTCTGCA AACGCTGATA
GATACTACCC GTGCTGAGCT TGAACAGGCA CAAGTATCAC TTAATGATCG CCGCATTTTG
GCTCCTTTTG ATGGCCGTTT AGGCTTACGT CAAGTGAGCG TGGGCAGCTT AGTGACACCC
GGAACTGAAA TTACAACACT TGATGATATT TCTAAGATTA AACTAGATTT TTCTGTCCCT
GAGCGTTTTA TTCAAGAGTT ACGCCCTGGT AAATTGGTGG AAGCCACTGC TATCGCATTT
CCTGATGAAA CCTTCAATGG CATTGTGACC TCCATAGATA GCCGTGTGAA TCCAACGACA
CGGGCTGTGA TAGTTCGTGC TGAAATACCG AACCCCGATC TGCGTTTATT ACCTGGCATG
TTAATGAAGG TCAAACTAAT TAAACGCAGC CGTGATGCCT TGATGTTACC TGAATCTGCC
ATTATCCCTT TGCAGAGTAA TCATTTCGTT TATAGCGTCA ATAGCGATAA TGTGATTGAA
CGTAAACAAG TGACTATTGG TATTCGTACC CGTGGCTGGG TTGAAATTCT CGATGGTGTG
ACATCCGGTG AGAAAGTCGT CATACGTGGG CTGTTAAAAG TGCACCCAGG CGATAAGGTC
ACAACTCAAT TAGCTGAAAA GTTTAGCTAT CTATCCACAG ATGCTGATGT GGAGCCAAGC
GTATGA
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| Protein sequence | MKKIILIIAI LASAWFGYQA MQPQEIAQAK VKLVPNVVIA TAEIAPVRDE VEAIGTNKAY
ESVTITPKVT DMVMSLNFDD GDIVKRGDLL VQLQNAEQIA KVKAAQVKVT DNKRELNRIS
SLVTSRTVAE LERDRLQTLI DTTRAELEQA QVSLNDRRIL APFDGRLGLR QVSVGSLVTP
GTEITTLDDI SKIKLDFSVP ERFIQELRPG KLVEATAIAF PDETFNGIVT SIDSRVNPTT
RAVIVRAEIP NPDLRLLPGM LMKVKLIKRS RDALMLPESA IIPLQSNHFV YSVNSDNVIE
RKQVTIGIRT RGWVEILDGV TSGEKVVIRG LLKVHPGDKV TTQLAEKFSY LSTDADVEPS
V
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