| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1622 |
|---|
| Symbol | |
|---|
| ID | 5079444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1846801 |
|---|
| End bp | 1849635 |
|---|
| Gene Length | 2835 bp |
|---|
| Protein Length | 944 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640498761 |
|---|
| Product | endonuclease/exonuclease/phosphatase |
|---|
| Protein accession | YP_001183146 |
|---|
| Protein GI | 146292722 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2374] Predicted extracellular nuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAACA CGAAAACTTT GCTGGCGTTA GCCATCAGCA GCGTCTGTGG GCTTGCCCAT
GGCGCGGATA ATTTAATCAT TTCTGAATAC GTCGAAGGCA GTGGCAACAA TAAAGCCATC
GAACTGTATA ACCCAACTAC AGACGTTATT GATTTAAGCC AATACCAATT GCGTTTCTAT
TTCAATGGCA GCACCAATGT CGGTACGACT ATTGCGCTCA CTGGCTCATT AGCAGCGGGA
GCGACTTATG TGGTTGCCGA TAATGACGCG TCTGCCGATA TTCTTGCGGT GACAAATCAA
CAGAGTACAG CAAGTTTTTT TAATGGTGAT GATGCCATTG TTCTGACATA TCAAAATCAA
GTGATTGATA GCTTAGGTCA AGTGGGCGTT GATCCGGGAG CAGAGTGGGG CAGTGGTTTG
CTTTCCACCC AAGACAATAC CCTGCGTCGT AATCCTAATT TATTGATTGC AGATACCATT
ATTGATGATG AGGTGAACTT TAGTACTTGG CTGGGCTTTG CTAAGGATGA TATCTCGGAT
CTTGGTAAAT TCAGCGCAGG TACGCCAACC GATCCAGTCG ACCCTCCACC AAGTTCTTTA
GTGTGCGGTG AAGATGCCAC GGCGATTCAT ACGCTTCAAG GCGCTGGAGC TGTAAGCCCG
CTTAATGGCC AAACCTTAGT GGTTGAGGCG GTTGTTGTCA GTAATCAAGA AGCCGGTCTT
AAAGGCATTT TTATGCAAAT GGCTGATCAT GAAGTCGATA ACGACCCACT GACCTCGGAA
GGTGTGTTTG TGTATACAGG GAATGCACCA ACCGCGTATG TGGCGGGCGA TCGTATTCGT
TTAAAAGCAA AAGTCACCGA ATATCAAGGT TTAACGGAAT TAACGACCGT CTCTGAGCAC
AAGTTATGTG CCACAGGTCA AGCACTACCA ACGGCTGCGG TAGTGACTTT ACCCGTTAAC
AGCAGTGATG ATTTCGAACC TTTTGAGGGG ATGCGTGTTC GTTTTAGCCA AGATTTAGTG
GTGAACGAAG TCTATAACCT CGGTCGTTAT GGTGAAATTT CATTAGGCAG TCAGCGTCAC
TTTATTGGTA CGCAGGTCGC TGCACCGGGC GCAGATGCGC TGGCGGTGAG CGCAGCCAAC
CAACGGGACA GTATTTTATT GGATGATGGT TTAACGGTGC AGAATCCCGA CCCTGTGCAA
TTCCCCGCCC CTGGGCTTAG CGCATCAAAC ACAGTGCGTG TGGGCGATAG CGTGACATCG
CTCACAGGTG TGATGCACTA TGGCTTTAAT TTGTATCGCA TTATGCCAAC GGAAACGGTG
AACTTTGTGG CGGAAAATCC ACGCCCTGTT GCGCCCACAT TGGTTGATGG CGGCAATTTA
AAAGTCGCTA GTTTTAACGT GCTTAACTAC TTCAATGGCG ACGGCCAAGG CGCTGGTTTC
CCAACCGCGC GTGGTGCCAA TACCTTAAGC GAGTTTGAGC GGCAAAAGGC CAAGATTGTC
AGTGCCATGG TGGGCATTAG TGCCGATGTA TTCGGCTTGA TGGAAATCGA AAACGATGGC
TTTGGCGCTA ATTCAGCTAT TGCTGATTTA GTCGCAGGTT TAAATGCCGC AGTGGGTGAG
GCGCGTTATG CGTATATCGC GCCAACAGGC ATAAATGCAA TTGGCACCGA TGCCATCACT
GTCGGCTTGA TTTATCGTCG TGATAAAGTC ACACCGAAGG GTGCTGCGCG CATTCTATCC
AGTGCCAATT CGCCATTAGA TGATAATCAA CAACCCCTGT TTAACGATAC CAGAAACCGT
CCAATGTTGA CGCAAGCCTT TAACGTGAAT GGCAGTGAAG AGGGGGTGGT TGTCGCGGTG
AATCACCTTA AATCTAAGGG CAGTGAGTGT GCGGGCGATC CTGATCTTAA CGACGGTCAA
GGCAACTGTA ATAGCACTCG TACCCGTGCG GCGACTGCTG TTGGTCAATG GTTAGGCGAG
CAATATCCAG AGCAAGGCGT GCTGCTGATT GGTGATTTGA ACGCCTATGC GAAGGAAGAT
CCATTAACAG CCTTGGCTAA TGCGGGCTTT AGTGAACTGT TTGCTGAGCT TAGAAAACCC
AATCCATACA CTTATGTGTT CTCAGCCGAA TCGGGTCAGT TAGATCATGC TTTAGCAAAC
GCCGAGTTAC TGGATAAAGT GGTGGATGTA ACACAGTGGC ATATTAATAC CGATGAACCA
CGCGTATTGG ATTACAACGA AGAGTTTAAG ACGCCCGCTC AAATCCAAGA TTTATACTCA
ACTGATGCTT ATCGCTCATC GGATCACGAT CCTGTGGTGA TTTCACTCTT GCTTGAAGCG
GAAAAAGTGG CGCCAGTTGC CAGTTTCACT CAAGTGGTGA ATGGTGCGAC TGTGCAACTG
ACATCCACTT CCAGCGACAG TGATGGACAC ATTGTTTCTG CTGAGTGGAA CTTGGGTGAT
AATACTGTGG CAGTAGGGAA TGTTGTCACT CACAGTTACC GCCAAAGCGG TGAGTATCAG
GTTACACTCA CTGTGACGGA TAATGATGGT CTCACCCAGA GCATCTCCCA AAAGGTGACA
GTGGTTGTTG AAAATGTGAA AAAGCCGCCA GTCGCGCAAA TTCAGCGTAT TAATTTATGG
TTAGTCGATA TGTTTATTTC GACGAGCTAC GATACCGATG GTGTGATCAA ACAACATAAA
TGGACGTTTG ATAATGGCAC CCGCGCTAAC GGTCAAGTGG TATTGCGCCT TGCCCGTCGT
GGACAACACA CAGTTGAACT GACCGTTAAA GATAACGACA AGTTAACCGA TACCACGACA
CTGACTTACC GTTAA
|
|---|
| Protein sequence | MFNTKTLLAL AISSVCGLAH GADNLIISEY VEGSGNNKAI ELYNPTTDVI DLSQYQLRFY
FNGSTNVGTT IALTGSLAAG ATYVVADNDA SADILAVTNQ QSTASFFNGD DAIVLTYQNQ
VIDSLGQVGV DPGAEWGSGL LSTQDNTLRR NPNLLIADTI IDDEVNFSTW LGFAKDDISD
LGKFSAGTPT DPVDPPPSSL VCGEDATAIH TLQGAGAVSP LNGQTLVVEA VVVSNQEAGL
KGIFMQMADH EVDNDPLTSE GVFVYTGNAP TAYVAGDRIR LKAKVTEYQG LTELTTVSEH
KLCATGQALP TAAVVTLPVN SSDDFEPFEG MRVRFSQDLV VNEVYNLGRY GEISLGSQRH
FIGTQVAAPG ADALAVSAAN QRDSILLDDG LTVQNPDPVQ FPAPGLSASN TVRVGDSVTS
LTGVMHYGFN LYRIMPTETV NFVAENPRPV APTLVDGGNL KVASFNVLNY FNGDGQGAGF
PTARGANTLS EFERQKAKIV SAMVGISADV FGLMEIENDG FGANSAIADL VAGLNAAVGE
ARYAYIAPTG INAIGTDAIT VGLIYRRDKV TPKGAARILS SANSPLDDNQ QPLFNDTRNR
PMLTQAFNVN GSEEGVVVAV NHLKSKGSEC AGDPDLNDGQ GNCNSTRTRA ATAVGQWLGE
QYPEQGVLLI GDLNAYAKED PLTALANAGF SELFAELRKP NPYTYVFSAE SGQLDHALAN
AELLDKVVDV TQWHINTDEP RVLDYNEEFK TPAQIQDLYS TDAYRSSDHD PVVISLLLEA
EKVAPVASFT QVVNGATVQL TSTSSDSDGH IVSAEWNLGD NTVAVGNVVT HSYRQSGEYQ
VTLTVTDNDG LTQSISQKVT VVVENVKKPP VAQIQRINLW LVDMFISTSY DTDGVIKQHK
WTFDNGTRAN GQVVLRLARR GQHTVELTVK DNDKLTDTTT LTYR
|
|---|
| |