| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1611 |
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| Symbol | cpdB |
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| ID | 5079433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 1834595 |
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| End bp | 1836661 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640498750 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_001183135 |
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| Protein GI | 146292711 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0026454 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAATA AGAAAATACT TGCAGTGATG ATCACTGCCG CCCTTGGCGT GAGTGCCTGT
GGCTCAGATG ATGACACGAT TATTCAACCT GATGACCGTG TCGTTCAAGC AGATTTACGG
GTGCTAGAAA CCACAGATTT GCACACAAAT ATCATGGATT TCAATTACTA CAGTGGTAAA
AATGATCCAA CTATCGGTCT AGCTCGCACT GCAAGCTTAA TTCACGCTGC ACGCAGTGAA
GCCAAAAACA GTGTACTCGT TGATAATGGC GATCTGCTAC AAGGCAGCCC AATGGGCGAT
TATATGGCTA AAGTTGGCCT GCAAATGGGT GATATTCATC CAGCCTATAA AGCCATGAAC
CTATTAGATT ATGAAGTCGG TAATATCGGT AACCATGAAT TTAACTATGG TTTAGATTTC
TTAAATAAAT CCATTAGTGG TGCAGATTTC CCTTATATCA ACTCAAACGT TTATTGCGCC
GACGATAATG GTTGCTGGAA TGAGGTTAAA AAAGGTGAGC ATTTATTCAC CCCTTATCTC
ATCAAACAAA AAAATATTAT CGACAGTGAA GGTAATAATC AAACCATTAA CATTGGTTAT
ATTGGTTTTG TGCCACCGCA AATTCTATTG TGGGATAAAC AAAATCTGAC GGGTAAAGTC
ACGGTCGAAG ATATTATTGA AACCGCGAAA AAATATGTCC CCGAGATGAA AGCAAAAGGT
GCCGATCTTA TTATCGCCAT CCCTCATTCT GGTATTGGAT CAACTGAAAA TCCTGGCGAT
CCTATGGCTG AAAACGCCAC TTATGCTTTG ACCTATGTAA ACGGCATAGA TGCGATTCTC
TTTGGTCACA GCCATTCCAT CTTCCCAGAT GCTAAGTATG CTGACTTACC TAATACCGAT
GTCACTAAAG GCTTACTGAA CGGCATACCT GCAGTTATGC CAGGACGTTG GGGTGATAAC
TTGGGAGTGG TTGACTTTAA ACTTGAGCGT AAAGATGGTA AATGGCATGT CCTTAGTGCC
AAAACGCAAG CTCGCCCTAT CTATAATGGT ACAACTAAGG AAGAGTTAGT TAGCCAAGAT
CCTGCAATTA GAGATGCAGT CGCAGCAGAA CACCAAGGCA CCCTCGCTTT TGTGGATGAA
CCTATCGGCG TTGCCGCAGC GGACATGTAC AGCTTCCTGA CCTTAGTGCA GGACGATCCA
ACGGTACAAA TCGTGTCCGA TGCACAAATC GCTAACGTGA AAGCAAAATT ACCTCCGGAA
TTAAAAGATC TGCCAGTGCT ATCGGCCTCA GCTCCTTTTA AAGCGGGTGG TCGCCACGGT
ACAACCAGCG ATGCCGATCA ATTTGTGCAA GTTGATAAAG GCCCACTGAC CTTTAAAAAC
GCCGCCGATC TGTACCTATA TCCCAATACT ATGGTGGCAG TCAAAGCGAC AGGTGCAGAG
TTAAAAGATT GGCTCGAGTG CTCAGCGAAC CAATTCAATC AAATCGATCC AACAAAAACC
ACCCCACAAA GTTTAATTAA CTGGGATGGT CATCCAACCT ATAACTTCGA CGTACTCGAT
GGCTTAACGT ACAAGATAGA TGTAACTCAA CCGAGCAAGT TTGACCGCGA TTGCGCCGTC
GTTAATGCCA ACGCAAACCG TATCGTTGAT TTAAGCTATA AAGACGAAAA CGGCAAAGTC
ATCACAGGTG AAGAATTTGC CGCGAAAGCG TTTATTGTCG CCTCAAATAA CTACCGTGCC
TTTGGCGGTA AGTTTGCAGG TACGGGTAGC GACCATGTGG TGCTTGAACT ACCTGACACT
AACCGTGAAG CGTTAGCGGC CTATATCACA GCGCAATCTC AGTACAACGA AACCACTGGC
AAATACGAAG CTATGGTAAA TCCAAGTGCC GATTACAACT GGGATTTCAA AACCATCAGC
ACTAACGTCA CCTTAGATGT TCGCTTCGAA ACCCAAGACA GTGACAAAGC CGCAGCCTTT
ATCGAAGCTA ACAAGCAACG TGAAATGAAG AAGATCAGCA AGGATGAACT GGGTTTCGCC
GTTTATAGCA TCAACCTAAC CAAATAA
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| Protein sequence | MLNKKILAVM ITAALGVSAC GSDDDTIIQP DDRVVQADLR VLETTDLHTN IMDFNYYSGK
NDPTIGLART ASLIHAARSE AKNSVLVDNG DLLQGSPMGD YMAKVGLQMG DIHPAYKAMN
LLDYEVGNIG NHEFNYGLDF LNKSISGADF PYINSNVYCA DDNGCWNEVK KGEHLFTPYL
IKQKNIIDSE GNNQTINIGY IGFVPPQILL WDKQNLTGKV TVEDIIETAK KYVPEMKAKG
ADLIIAIPHS GIGSTENPGD PMAENATYAL TYVNGIDAIL FGHSHSIFPD AKYADLPNTD
VTKGLLNGIP AVMPGRWGDN LGVVDFKLER KDGKWHVLSA KTQARPIYNG TTKEELVSQD
PAIRDAVAAE HQGTLAFVDE PIGVAAADMY SFLTLVQDDP TVQIVSDAQI ANVKAKLPPE
LKDLPVLSAS APFKAGGRHG TTSDADQFVQ VDKGPLTFKN AADLYLYPNT MVAVKATGAE
LKDWLECSAN QFNQIDPTKT TPQSLINWDG HPTYNFDVLD GLTYKIDVTQ PSKFDRDCAV
VNANANRIVD LSYKDENGKV ITGEEFAAKA FIVASNNYRA FGGKFAGTGS DHVVLELPDT
NREALAAYIT AQSQYNETTG KYEAMVNPSA DYNWDFKTIS TNVTLDVRFE TQDSDKAAAF
IEANKQREMK KISKDELGFA VYSINLTK
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