Gene Sputcn32_1557 details

Gene Information

• Locus tag: Sputcn32_1557
• ID: 5079517
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 1773987
• End bp: 1775795
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640498690
• Product: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
• Protein accession: YP_001183081
• Protein GI: 146292657
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02203] lipid A export permease/ATP-binding protein MsbA

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGCAT CTCCTAATAA CGAAATGTGG GTAGTTTTCA AACGATTACT GGGCTATCTC 
AAACCAATGA AAGGCATGTT TTTGCTTTCC GTTGCCGGGC TTATTGTTTA TGGGGTCGTC 
GATGCGGCCT TCATCGCTTT TATCGGCCCC TTTATCGATA AAGGATTTTC AAGTGGTGCC 
CCTACTGCAA TCAGTAGCAG CATTGCCTTG CCGAATAACC AAGGGTTTCA TGCCAACAAT 
GATGTGTTAA TGATGGCACC ACTTGTGGTT ATCTTAATGT TTTCCCTACG AGGTCTTGCC 
AACTTTATTT CAACCTATGG CATCTCTTAT ATGAGTGCTC GTTTGATCAT GGATATGCGT 
CAGCAAGTGT TTGAGCATTA TCTCAGCCTA CCCGTAAGCT ACATGGATAA AGAAAATACG 
GGAAATTTAA TATCTAAAGT CACCTTTGAT ACTGAACAGA TTGCAAGGGC ATCTGGTAGT 
GCATTGATTT CTATTGTAAG AGACAGTGTT ACTGTGATGG GGATGTTAGT ACTCATGTTC 
TACAATTCGT GGAAGCTATC CCTTTGTATC TTGGTGATTG GCCCGCTTAT GGGGTTGGTC 
ATGACTATGG TCAGTCGCCG TTTCCGTAAG GTTTCTAAGC AAATTCAAAC AGCTATGGGA 
GGGGTGAGTG CGACCACAGA GCAGATGATT AAAGGCCATA AAAACGTTTT AGCCTTTGGT 
GGACAAGAAA CTGAAATTGC TCGTTTTGCA AAGGTGAATG ATAAAAATCG TAATCAAAAT 
ATGAAATTAG CCGTAGCTCA AGCGATAAGT CAACCTGTGA TTATGGTGAT TGGTTCTTTC 
GCTTTAGCAT TTGTACTGTA TGCTGCCAGT TTAGACAGTA TGAAAACGGA TCTTACCGCT 
GGGACATTTG CCACTATTTT GGGTGCGATG ATGGCCATGT TACAGCCCAT CAAAAACTTA 
ACCCGCGTGA ATGCTGAGTT TCAGCGTGGT ATTGCTGCTT GTACCACAGT GTTTGAATTA 
TTAGATACTT TACCTGAATC CGATACAGGA ACTTACACTG TGAAACGGGC TCAAGGTAAT 
TTACGTTTTG ATGAGGTTTG TTTTAGCTAT GAAGGCCAAG AACGCCGAGC CCTCGATAAT 
GTCAGCTTTG AGGTTAAACA AGGCCAAACT TTGGCATTAG TAGGGCGTTC AGGCTCGGGT 
AAATCAACCA TTGCAAGTTT GGTGACGCGT TTCTACACAG GGTTAGAGTC TGGCGATATT 
TTGCTCGATG ATGTGAGTAT TTATGATTAC TCGTTGAAAT CACTACGTAA TCAAGTGGCT 
CTTGTCTCTC AACAAGTGAC TTTGTTTAAC GATACTATTG CTAACAATAT TGCTTACGCA 
TATCCAGGTG AAGTGACCCG TGGGCAAATC ATTGAGGCGG CAACACTTGC CCATGCGATG 
GAGTTTATCG ATCAGCTTCC TGAGGGATTG GATACACAAA TCGGGGAGAA TGGCGTGCTG 
TTGTCTGGTG GACAAAGGCA GCGTATTGCC ATCGCACGCG CTATGTTGCG TGATGCACCT 
GTGCTTATCC TGGATGAAGC GACTTCAGCG CTTGACACTG AGTCTGAGAA AGCGATCCAA 
AAGGGACTTG ATAATTTGCG TCAAAACCGC ACTTCAGTGG TTATTGCTCA CCGATTATCA 
ACCATTGAAA GTGCAGATCA GATCCTCGTG GTAGACCAAG GTCGTATTGT TGAGCGAGGC 
ACCCACAAAT CCTTACTGGA AATGGGTGGT ATGTATGCCA AGCTGTATCA AATGCAATTT 
GGTAACTAG 

 

Protein sequence

MTASPNNEMW VVFKRLLGYL KPMKGMFLLS VAGLIVYGVV DAAFIAFIGP FIDKGFSSGA 
PTAISSSIAL PNNQGFHANN DVLMMAPLVV ILMFSLRGLA NFISTYGISY MSARLIMDMR 
QQVFEHYLSL PVSYMDKENT GNLISKVTFD TEQIARASGS ALISIVRDSV TVMGMLVLMF 
YNSWKLSLCI LVIGPLMGLV MTMVSRRFRK VSKQIQTAMG GVSATTEQMI KGHKNVLAFG 
GQETEIARFA KVNDKNRNQN MKLAVAQAIS QPVIMVIGSF ALAFVLYAAS LDSMKTDLTA 
GTFATILGAM MAMLQPIKNL TRVNAEFQRG IAACTTVFEL LDTLPESDTG TYTVKRAQGN 
LRFDEVCFSY EGQERRALDN VSFEVKQGQT LALVGRSGSG KSTIASLVTR FYTGLESGDI 
LLDDVSIYDY SLKSLRNQVA LVSQQVTLFN DTIANNIAYA YPGEVTRGQI IEAATLAHAM 
EFIDQLPEGL DTQIGENGVL LSGGQRQRIA IARAMLRDAP VLILDEATSA LDTESEKAIQ 
KGLDNLRQNR TSVVIAHRLS TIESADQILV VDQGRIVERG THKSLLEMGG MYAKLYQMQF 
GN