Gene Sputcn32_1556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1556 
Symbol 
ID5079516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp1771630 
End bp1773954 
Gene Length2325 bp 
Protein Length774 aa 
Translation table11 
GC content43% 
IMG OID640498689 
ProductDNA internalization-related competence protein ComEC/Rec2 
Protein accessionYP_001183080 
Protein GI146292656 
COG category[R] General function prediction only 
COG ID[COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) 
TIGRFAM ID[TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCGAT TCATCTTAGG CTTTAGTGCC AGTTTATTAT CAGCGATGTT ATGGCCATCG 
TTGCCGCCTG TAGCTTATCT ACCCTATCTT TTGGTCGGGG CTTTAATCTT ATATCAAAAA
GCACCGCTTT GTTCAGGTGT ACTCTTTGCA ATGCTGTGGC TAACGGTTTT TTGCTTAGGA
TTATCTAGGC AGGACCTTCC TGTGCAACAA CAACCTCTAC AGGTGAGGGG CGAAATCATA
TCACTAGTTA GCCAAAACAG CGACTGGCTT AGTTTGGATA TTGCCATCAT TAAACCAAAT
TTAATCTTAA GACCCCGCGC AAAACTAAGA TTGACATGGA AAGCGCCACC AGACGTGGCA
GTCGGGCAGG TTTGGTTATT CACTATTACA CCTAAAAGTG TGTCTAATGT GCTGAACCAA
GGCGGATATA ATGAGCAGAA GCAATTAATT AGTCAGCATA TTGTTGGTAA AGGACGAGTG
ATAAAAGCGG AATTAATTGA GAGTCAGCCT TCCTTAAGAA ATCAACTCGT ATCGGCATTA
GCTCCTCAAT TGGCGCCATT GCAACAGGGA GATCTTCTAC TGGCGTTAAT TTTGGGAGAT
AAGCAGCTTA TTTCATCTGA ACGCTGGCAA ATGCTAAGGC AAACGGCAAC AGGGCATTTA
GTGGCAATAT CAGGCTTACA TTTATCTGTG GTTACAGCAT GGATTTATGC TGTGATGATA
TTTGGATTAA CTCGTTTTGT TCCTCATCCT AGTCGGCGAA ATTGGGTTTT TGCGTTGTTA
CTGTCAGGCA TAGGCGCTGC ATTTTATGCT TATTTAGCGG GTTTTGGGAT ATCGACACAA
CGTGCACTGG TGATGATATT ACTCTTAATG TTACTCAGTT TATTAAAGCG GTTTTCGAGT
CCATGGGAAC GCTTGTTATT TGCTTTATTT ATGGTGCTAT TGATTGATCC TCTTGCTTGT
TTAAGTGCTG GGTTTTGGCT GTCATTTTGT GCATTAGCCA TTATTTTGTA TACCTTAGAG
GCCGCTCCTA AAGTACACCA ATTAACTAAT GACATCACCC CTTTAGGGCG TGTTCGTGCA
GGGTTATTGC AATTTTGGTC TATTCAATGG CGATTGAGTC TTGGGCTTGG ATTCGTGCAA
GCGGTGCTTT TTGGTGGCAT AAGTGCACAT AGTCTGTGGA TTAATATGCT TGCAGTACCT
TGGTTTAGTT TTGTGGTTAT CCCCATCGCA ATGGCGGGCT TTGTGTGCTG GTGGATTGGT
ACTGCGCTTG GATTCTCCTG GATGGGCTTA CTCGAACTAA GCAATTGGGC CTTGATGCCC
TATGGACAAT TATTAGCGAT AAGCGGTCAG TTACCCATTC ATTGGCAAGT GGTCTCCGAA
AGTGTATTGG CATTGGCATT GTGTGGACTA TTAGGCGGTG TATTATGGCG TTACATCCCT
AAACAACGTC TATATTGGCC TTGGCGTTTT ATAGTGAGCT TACTCTTTGT TCCGTTTCTC
CTATCATTTT TATTAAAATG GTTACCTTTA AAGTCAGCGA CTTGGTCAAT GCATTTATTA
GATGTAGGGC AGGGGTTAGC TGTTGTTATA GAGAAAGAAG GCCGAGGACT AATTTATGAC
ACTGGCGCCG CATTTGGAGA GAGTTTTAGT TACAGTCAAC GGGTGATTAT TCCTTTTTTA
AATGCTAAAG GGATCCGAGA AATTGACTAT GTGTTTATTA GCCATAGCGA TAACGATCAC
GCTGGCGGAG CCTCTGCTCT CTTAGCGGCT TATCCTAAAG CTCAATGGAT AACCGATGTA
ACTGAAATAG CTGGAAAGGG CTGTAGACCT CAGCAAATTA ACTGGCAGGA CCTTAAAATA
AGCATCATTT TTCCACAAAA ACCAATAGCG GGAAATAATG GTTCTTGTGT CGTGCGCATT
GATGATACTC AGCAGCGTGT CTTATTGACG GGGGATATTG AAAAAAATAG TGAAATGAAA
TTATTAACGC AAGTCAAAAT GCAGCCGACG ATATTAATGA GTCAAGTCTT AATTGCTCCA
CACCACGGTA GCAAAAGCTC ATCAACCGAA GCATTTATTG ATGCAGTTTC CCCTGAGTTT
GTTCTTTTCC CCGCGGGGCT CGGAAATCGA TACGGTTTTC CTAAACCCGT GGTGGTTGAT
CGTTATCAGG CGCGGAATAT CCCTCATTTA ACCACAGGAA TAGAAGGGCA GATTAGTGTG
ATTTTTCGCC ATGATGGTCG AGAAGTGAAA ACCTATAGGC GCGATCTTGC GCCATTTTGG
TACAACCGCT TGTTTAGATT TGGTGACTTG ATTAATCCAG AGTAG
 
Protein sequence
MNRFILGFSA SLLSAMLWPS LPPVAYLPYL LVGALILYQK APLCSGVLFA MLWLTVFCLG 
LSRQDLPVQQ QPLQVRGEII SLVSQNSDWL SLDIAIIKPN LILRPRAKLR LTWKAPPDVA
VGQVWLFTIT PKSVSNVLNQ GGYNEQKQLI SQHIVGKGRV IKAELIESQP SLRNQLVSAL
APQLAPLQQG DLLLALILGD KQLISSERWQ MLRQTATGHL VAISGLHLSV VTAWIYAVMI
FGLTRFVPHP SRRNWVFALL LSGIGAAFYA YLAGFGISTQ RALVMILLLM LLSLLKRFSS
PWERLLFALF MVLLIDPLAC LSAGFWLSFC ALAIILYTLE AAPKVHQLTN DITPLGRVRA
GLLQFWSIQW RLSLGLGFVQ AVLFGGISAH SLWINMLAVP WFSFVVIPIA MAGFVCWWIG
TALGFSWMGL LELSNWALMP YGQLLAISGQ LPIHWQVVSE SVLALALCGL LGGVLWRYIP
KQRLYWPWRF IVSLLFVPFL LSFLLKWLPL KSATWSMHLL DVGQGLAVVI EKEGRGLIYD
TGAAFGESFS YSQRVIIPFL NAKGIREIDY VFISHSDNDH AGGASALLAA YPKAQWITDV
TEIAGKGCRP QQINWQDLKI SIIFPQKPIA GNNGSCVVRI DDTQQRVLLT GDIEKNSEMK
LLTQVKMQPT ILMSQVLIAP HHGSKSSSTE AFIDAVSPEF VLFPAGLGNR YGFPKPVVVD
RYQARNIPHL TTGIEGQISV IFRHDGREVK TYRRDLAPFW YNRLFRFGDL INPE