| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1537 |
|---|
| Symbol | |
|---|
| ID | 5079596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1754610 |
|---|
| End bp | 1755959 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640498670 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001183061 |
|---|
| Protein GI | 146292637 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.713304 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAATTTA CCGATTTTTC TCTGGACCAG CGTCTTTTAC AAAGCTTAAA ACATATGGGG
ATCACCGCCC CCACCGCCAT CCAGGAACAA ACACTGCCTA TCGCATTGGC AGGTAAAGAT
TTAATGGCTT CGTCAAAAAC AGGCTCGGGT AAAACCTTGG CCTTTTTGCT GCCAGCATTG
CAAAGAGTTA TATCCACCCG CTCACTCAGT AAACGCGATC CTAGAGTATT GATTTTATTA
CCGACACGCG AATTAGCTCA CCAAGTTTAT AGTCAGCTTC GCTTACTGGT GGCCAACACT
CAGTACAAGG CGATTAGTGT ACTTGGGGGG GAGAATTTTA ATGATCAAGC TAAAGCATTA
GCAAAAGAGC CCCATTTCAT CGTGGCGACA CCTGGACGCA TTGCCGATCA TTTAGAGCAA
AAACATTTGT TCCTCAATGG ATTAGAACTA TTAATCCTTG ATGAAGCAGA CCGTATGTTA
GACTTAGGTT TTGCACCACA GCTTAAAACG ATCAATGAAG CCGCTGATCA TAAACGTCGT
CAAACCTTAA TGTTCTCCGC CACCTTAGAT CACAGTGAAA TCAATGATAT TGCAGCTACA
CTGCTAAAAA ATCCTGCACA TGTTGCAATT GATGCATCCC ATAGTGAGCA CAATGACATT
CATCAGCGTA TTTTTCTTTG CGATCATTTA GACCATAAAG AAGCCCTGCT GACTCGCTTA
CTTCAGGATG AAACTCACAA ACAAGTGATT GTTTTTACCG CAACCCGCCC CGATACCGAG
CGATTAGCGG CAAAATTATC GACCCAAGGA TTTGCGACTG CGGCACTGAG TGGCGACTTA
AAGCAAGCTG CACGTAACCA AATCATGGAT CAATTCGCCC GTGGCCAACA GCAAATCCTC
GTCACGACCG ATGTTGCATC GCGTGGTCTT GACTTACTCA ATGTATCATT AGTAATTAAC
TTTGATATGC CTAAATTTGC CGAAGAATAC GTACATCGTA TCGGTCGAAC TGGCAGAGCT
GGCGCAAAAG GCGATGCGAT ATCCCTAGTT GGCCCCAAAG ACTGGGATAA CTTCAAGAAA
GTCCAAATAT TCCTCAGAAA AACATTTGAA ATCAGTATTA TTCCGGGTTT AGAAGCAAAA
TTCAGCGGTT TAAAAGAGCA ATCCAAGCAA ACGCCAATCA AGCGTGTTGC AAAAACCAGC
ACTTCTGCTG GAAAAACCAA AGCTAAAGCG GTTAAAGCCC CACCGTCTAG GGATAAACGT
TTTATTACTG GGGTCGATAT TGGCGATGCA CCAATGCGTA GAAAGCCCAC AGCCCCTTTA
CTGCAAGATA ATGATACTGA AGAAGTTTAA
|
|---|
| Protein sequence | MQFTDFSLDQ RLLQSLKHMG ITAPTAIQEQ TLPIALAGKD LMASSKTGSG KTLAFLLPAL
QRVISTRSLS KRDPRVLILL PTRELAHQVY SQLRLLVANT QYKAISVLGG ENFNDQAKAL
AKEPHFIVAT PGRIADHLEQ KHLFLNGLEL LILDEADRML DLGFAPQLKT INEAADHKRR
QTLMFSATLD HSEINDIAAT LLKNPAHVAI DASHSEHNDI HQRIFLCDHL DHKEALLTRL
LQDETHKQVI VFTATRPDTE RLAAKLSTQG FATAALSGDL KQAARNQIMD QFARGQQQIL
VTTDVASRGL DLLNVSLVIN FDMPKFAEEY VHRIGRTGRA GAKGDAISLV GPKDWDNFKK
VQIFLRKTFE ISIIPGLEAK FSGLKEQSKQ TPIKRVAKTS TSAGKTKAKA VKAPPSRDKR
FITGVDIGDA PMRRKPTAPL LQDNDTEEV
|
|---|
| |