| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1498 |
|---|
| Symbol | |
|---|
| ID | 5079556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1710832 |
|---|
| End bp | 1711722 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640498630 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001183022 |
|---|
| Protein GI | 146292598 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTACCAG CTAAGATTTA TCAAGAAGAT CAAATTGCCT CTCCTATGAT GCGAGTATGG
CAAAATTTTT CAGCAAATCC GTTTGCTCTA GCAGGTTTGT GGACAATTGT ATTCTTACTG
CTACTCACTA TTTTTGGGCC AATGATTGCG CCCTTCTCCC CTGAAACTCA GGATCCAAGA
GCACTCTTGT TACCGCCATC ATGGGATCCA TCCGGTACTG TTGAGCATTT TTTAGGAACA
GATGATCTCG GACGCGATAT TTTTAGCCGA TTATTACACG GCGCACACCT TACTTTTGGT
ATGGCCATTT TAATTGTGGT AACGGCACTA ATCACAGGCT TTATTATCGG CTCTTTATCC
GGCATGATGC GCGGTTTAAA ATCCAGTATT CTTGGTCACT TACTCGACGC GCTATTGTCG
ATCCCTTCGC TGTTAATGGC CATTTTAGTC GTAGCTGTGA TGGGACCGGG CCTTGATAAT
GTGTTTTGGG CCGTGGGGAT TGCCTTAACC CCACAATTTG TCCGCTCCAT ACACCAGTCA
GTGCATGAAG AATTACAAAA AGAATATGTC ACAGCCGCGC GTTTAGACGG CGCTAACTCG
ATGCAAATTT TTTGGTATGT CATTATGCCA AACGTATGGG AAGTCGTGAT AATTCAAACT
ACCTTAGCCA TTTCGGCAGC CATTTTAGAT ATCGCGGCCC TTGGTTTTTT AAGCTTAGGC
GCACAAGCTC CCAGTCCTGA ATGGGGTGCA ATGGTCGCAC AGGGCGTAGA TAATTTATTA
ACCGCACCTT GGACCGTCAC AATTCCTGGG TTAGCAATTC TTTTTAGCGT ACTCGCCATT
AACTTGGTTG GCGATGGCCT ACGGTCGGCG CTTGCGCCCA TCAGAAACTA A
|
|---|
| Protein sequence | MLPAKIYQED QIASPMMRVW QNFSANPFAL AGLWTIVFLL LLTIFGPMIA PFSPETQDPR
ALLLPPSWDP SGTVEHFLGT DDLGRDIFSR LLHGAHLTFG MAILIVVTAL ITGFIIGSLS
GMMRGLKSSI LGHLLDALLS IPSLLMAILV VAVMGPGLDN VFWAVGIALT PQFVRSIHQS
VHEELQKEYV TAARLDGANS MQIFWYVIMP NVWEVVIIQT TLAISAAILD IAALGFLSLG
AQAPSPEWGA MVAQGVDNLL TAPWTVTIPG LAILFSVLAI NLVGDGLRSA LAPIRN
|
|---|
| |