| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1491 |
|---|
| Symbol | clpX |
|---|
| ID | 5079646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1700775 |
|---|
| End bp | 1702055 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640498623 |
|---|
| Product | ATP-dependent protease ATP-binding subunit ClpX |
|---|
| Protein accession | YP_001183015 |
|---|
| Protein GI | 146292591 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000155806 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGACA ACAAAAATAA TGGCGACAGC GGTAAATTGC TGTACTGCTC TTTTTGCGGT
AAGAGCCAGC ATGAAGTGAG AAAACTCATT GCTGGCCCAT CAGTATACGT ATGCGACGAA
TGCGTTGAAT TATGCAACGA TATTATTCGT GAAGAGATTA AAGAGATCTC TCCAAAACGT
GATAGCGATA AATTGCCAAC GCCACATGAG TTGCGTGCGC ATTTAGACGA TTATGTCATT
GGTCAAGACA GAGCCAAAAA AGTACTCTCT GTGGCGGTTT ATAATCACTA TAAACGCTTA
AAAAATTCAT CACCTAAAGA TGGGGTTGAA TTGGGCAAGA GTAATATTTT GCTGATTGGC
CCAACGGGTA GCGGGAAAAC TCTGCTAGCA GAGACGCTAG CACGCTCTTT AAACGTGCCT
TTCACTATGG CAGATGCAAC CACCTTAACC GAAGCAGGTT ATGTGGGTGA AGACGTTGAA
AACATCATTC AAAAATTGCT GCAAAAGTGC GACTACGATG TTGAGAAGGC ACAACGTGGT
ATCGTGTATA TCGATGAAAT CGATAAAATC AGCCGTAAAT CCGACAATCC ATCGATCACC
CGTGACGTCT CGGGCGAGGG TGTGCAGCAA GCGCTGTTAA AACTCATCGA AGGTACAGTT
GCCGCGGTTC CGCCACAAGG TGGCCGTAAG CATCCGCAGC AAGAATTCTT GCAAGTCGAT
ACTTCTAAGA TTCTGTTTAT CTGTGGTGGC GCATTTGCTG GGCTTGAGAA AGTGATTGAG
CAGCGTGCCC ACGTGGGCTC GGGTATTGGT TTTGGCGCGC AGGTGAAAGG CGAAAAGGAC
AAGGCGACAA TTTCTGAAAC CTTGTCTCAA GTTGAGCCTG GTGATCTGGT GAAATATGGC
CTTATCCCTG AGTTTATTGG TCGTTTGCCC GTGGTTGCAA CGCTGACAGA ACTGGATGAA
GAAGCCCTAG TGCAAATTTT ATCTCAACCT AAAAATGCCC TGACTAAGCA ATACAGCGCG
TTATTTGAGA TGGAAGGCGT TGAACTCGAG TTCCGCGAAG ATGCGCTAAA AGCGATTGCC
CATAAAGCCA TGTCGCGTAA GACGGGTGCC CGTGGCCTAC GTTCAATCGT AGAAAGTATT
CTGCTGGATA CTATGTACGA TATCCCCTCC GTTGACGGTG TGGTGAAGGC GGTAGTGGAT
GAATCCGTGG TAAATGGTGA GTCTGCTCCT ATCCTGATTT ATGAGCACAA TGAGACTCAA
GCCGCGTCTG GCGAACAATA A
|
|---|
| Protein sequence | MGDNKNNGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKR
DSDKLPTPHE LRAHLDDYVI GQDRAKKVLS VAVYNHYKRL KNSSPKDGVE LGKSNILLIG
PTGSGKTLLA ETLARSLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTV AAVPPQGGRK HPQQEFLQVD
TSKILFICGG AFAGLEKVIE QRAHVGSGIG FGAQVKGEKD KATISETLSQ VEPGDLVKYG
LIPEFIGRLP VVATLTELDE EALVQILSQP KNALTKQYSA LFEMEGVELE FREDALKAIA
HKAMSRKTGA RGLRSIVESI LLDTMYDIPS VDGVVKAVVD ESVVNGESAP ILIYEHNETQ
AASGEQ
|
|---|
| |