| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1479 |
|---|
| Symbol | |
|---|
| ID | 5079631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1684430 |
|---|
| End bp | 1686931 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640498608 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001183003 |
|---|
| Protein GI | 146292579 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0424195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAC GGTTCAATTT CAATACCGCA ACCAAAGCGA TGTTGGGTGC CGGTTTACTT
TCACTCCTAC TCGCAGGTTG CGGTGGCAGT GATGGTAACG ATGGTGCTGA CGGGCAACCA
GGCCCAGTTG GTTTAGATAT CGCTCAAGCG ACAACACTTA AAGCCAGTCT TGAAAATGTA
AAAATTGAAA GCGGTACAAC CAGCGTTGAT ATAGTACTGA CCAACGCCAA TGGCGTACCA
GTAACGGGCT TAGAACAATA TGCCCAAGTA AATGCACTTG CTTTAGGTAT CGCAAAACTC
GCACCAGAAA GTGGTAAAGG TTATAAAGCG CCACAATGGA TCAGCTATAT CAACTCAGTC
AAAGCCGCAG ATCCCGCACG CAGTCTAGCA AATTATAGCT ACACCGAAGG TGACGTGACG
AAAGAAGTCA AGTTCACCCC TGGTGACGCC ATTCAAGCTA ACATAGAATC TAGCTGTAAA
ACCAATTGCT TAAAAGTTGT TGATAACGGC GTTTACCGTT ACACGTTCCA AACTAACTTA
AGCACATTAG ATCCTATTGA AGGTCTTGAC TTAAGTTACG ACCCGACCTT GATACACCGC
ATCAGCTTAG AGCTTCAAAC AGACGGAAGT AAATCAGCTA AGTTGATCAA TACGCATATC
GACTTCTTAC CAAGTGATAA TTTCAGAGTG GCTAACCCCA CTGAAACTCG CACAGTGGTT
GATTTAGAAG CTAACTGTAT TAAATGTCAC AGTACAAACT ATGCTGACAC TTCTGCAACA
GCCAAACCAC TTGCACTTCA CGGTGGTAGA CGTATTGCGA TTGGCAACTG CCAAGTTTGT
CACACTAGCT ATAGTAAAGA TCCAGAAACG GGTGCATCAC TGGATATGGG CGCAATGGTC
CATGCCATCC ACAAAGGCAC CTATACTATG GTCGGTTATA GTGGTACAGC CTATGACTTT
AGCGGCACTA TGGCTAAAGC GGCAGCCCAG AATGGCTACC CACAATATCG TGCAGGTAGA
GACGTTTCTG AGCGTGTCAC TCTGCCAGTC GATATTGGAA GCTGCCAATC TTGCCACAGT
ACAGATGCTA AAGGCCCTGT TGATGCCGCA AACTTCAAGC ATCATAAAGG GTTAGCTTGT
GCTTCTTGCC ATATGACAGG CTTTAATCCT GTTGATAACA GCGAATGGTT AACTCCACCA
GAAGGTCAAA AAGACCGCGG ATTTGTGGGT AACTACTTCC ACTACTATGC AACCCCTGAG
ATTGATGGAA TCCCTGGTGC AGATCTTGTA AATGTATTCC AAAACGGTGG TTGTGCATCT
TGCCACGCAG CAGAAGGTGA AGAAGGTAGT GCAAAATACC ATCTAGCCAA AGCGAATGTG
ACTAAGAGCG TCCGTGATGA ATATGCTTAT AAGCTAGGTA ACGGTACTTT TGATGTGTCC
GGTAATAAAT TAACATTTAC CGTACAATGG CACAGCGATG TTGCACCTAA AGATGATAAA
GCCGTTAAAG AGTTATGGTT AGTGGCTGCA GCATTAGATG GTGAGTACAA AATAGGATAT
AAATCTTCAA CATTTGGCAG TCATCCTGGT CGTTTCTCTG TCAATCTTGT AAAAGAGTAT
CCCGCCATCA CTATGGTACA AGATGGTAAG ACACTGACTT ATACTATCTC TGGCATCACA
CAACCCGATA TGATTGCGCT GAAAAGAGGA ACCCTGTCAG CCAAGCTATT CGTATGTGCT
GATCCAACAG AGACAAAAGC GGTAGATTGC ACCGATACCA CTGTCACCAA TAAAACAGAA
GTCATTATCG CGGCAAATCA AGCAAACTTT GCAAGCGCAA CTGCTGGTGA TCCTGCTTTT
GTGGCTCGCA CCGTTGTTGC ATCTGAAGCA AAATGCGCAA ATTGCCATGG TAAACAAGCA
GACTTCTCTG TTTCACACTC TCGTGTCAGA CCTACGGGCG CTGCCGATAG TGGTTGTAGC
AGTTGTCATA CATCACAACC TAACACAGCC GTTAATCTAA CGGATGGTAG CTGTGTTAGC
TGTCATAATG ACTCACTGAC TGCGGCAAAC AGCACAGGCC ATAGTGCGAA TAGAGCAAAA
GCCTTTAGCC GTGGTTTTGA TTTCAAAGTG ATGGTTCACC AAATACATGC TAATACACGT
AGCGGTCGTT TCGGTAACTA CACCACCGAT ATTACCTTCC CTGAAAACGT AGCAAACTGC
GCAGTTTGCC ACGATAAAGG CCAACTGAGC TTAGCTAAAC TGGGTGACAA GCACGTGTTT
AATGCAAGCA CTGGTGAATA CTCACCTACC GTTGCAGCTT GTGCTTCGTG CCATGCGCCA
ACGGCTGAGG GTAACAGTGC TGTGATTGGT CACTTCGAGA ATAACGGTGG TGTGTACAAT
GGTACTGCGG GTACTTACAC CCCTGGTAGC GAAACCTGTG CAACCTGTCA CGGTGAAGGT
AAAGCATTTG GTGTGGATAA AGTTCACCCA GTGAAGTACT AA
|
|---|
| Protein sequence | MMKRFNFNTA TKAMLGAGLL SLLLAGCGGS DGNDGADGQP GPVGLDIAQA TTLKASLENV
KIESGTTSVD IVLTNANGVP VTGLEQYAQV NALALGIAKL APESGKGYKA PQWISYINSV
KAADPARSLA NYSYTEGDVT KEVKFTPGDA IQANIESSCK TNCLKVVDNG VYRYTFQTNL
STLDPIEGLD LSYDPTLIHR ISLELQTDGS KSAKLINTHI DFLPSDNFRV ANPTETRTVV
DLEANCIKCH STNYADTSAT AKPLALHGGR RIAIGNCQVC HTSYSKDPET GASLDMGAMV
HAIHKGTYTM VGYSGTAYDF SGTMAKAAAQ NGYPQYRAGR DVSERVTLPV DIGSCQSCHS
TDAKGPVDAA NFKHHKGLAC ASCHMTGFNP VDNSEWLTPP EGQKDRGFVG NYFHYYATPE
IDGIPGADLV NVFQNGGCAS CHAAEGEEGS AKYHLAKANV TKSVRDEYAY KLGNGTFDVS
GNKLTFTVQW HSDVAPKDDK AVKELWLVAA ALDGEYKIGY KSSTFGSHPG RFSVNLVKEY
PAITMVQDGK TLTYTISGIT QPDMIALKRG TLSAKLFVCA DPTETKAVDC TDTTVTNKTE
VIIAANQANF ASATAGDPAF VARTVVASEA KCANCHGKQA DFSVSHSRVR PTGAADSGCS
SCHTSQPNTA VNLTDGSCVS CHNDSLTAAN STGHSANRAK AFSRGFDFKV MVHQIHANTR
SGRFGNYTTD ITFPENVANC AVCHDKGQLS LAKLGDKHVF NASTGEYSPT VAACASCHAP
TAEGNSAVIG HFENNGGVYN GTAGTYTPGS ETCATCHGEG KAFGVDKVHP VKY
|
|---|
| |