| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1453 |
|---|
| Symbol | |
|---|
| ID | 5079605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1652415 |
|---|
| End bp | 1655972 |
|---|
| Gene Length | 3558 bp |
|---|
| Protein Length | 1185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640498582 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001182977 |
|---|
| Protein GI | 146292553 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0308] Aminopeptidase N |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0623006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTAT CAATGCTTAG GTTTGAGTGG CGTTATTATT TGCGTCAGCC ATCCTTTTAT
GTTGTTTCTT TTCTATTGTT TTTAATGAGT TTTCTATCAG TCGTCTCTAA CAATATTCAA
ATTGGTAGTG GCGGTGAGGT GATGAAAAAT AGCCCATTTG GGATTACCCA AACCATGTTG
ATCATGGGAC TCATTTCCAT GTTTGCCGTG GTGAATTTTG TGGGTAGCAC GGCTATCCGC
AATCATCAGC ATTTGATGGA AGAGCTGATT TATAGCAAAC CCCTATCACC ATTTGCATAC
CAATTTGGTC GATTTCTCGG CAGTTTTGTT GTGGTGATGA TGGTATTTGC CTTTATCCCT
ATAGGGTTAA TGCTCGGCTC TTTTATGCCA TGGGTCGATG CTAGCCGTTT TGGACCTTTT
GCGTTATCGA ATTATCTTGT GCCGTATTTT TTACTCGCCA TGCCGACTTT GCTGTTGATC
TCGACTCTAT TCTATGCGAT GGCAAGTCAT TTTCGCTCCT TGATGGCGCT CTATCTGACC
GCAGTAGCCA TGTTGGTGCT TTATACCTTG ACGGGCGAAA TGGCGAGTCA GCCACAATAT
CGTACTATTG CTGCTTTGCT TGATCCCTTT GCGCTGCGCA CCTTTGCTGA AGTGACCCGT
TACTGGACCA TTAGCGAGAA GAATAGCCAG TTAATTGAAT TCTCAGGACT CGTGCTGCAA
AACCGGGCGA TATGGTTTGG AATTGCCTGT GTATTACTGG CCATTTCCGG GATTTTCCGT
CAGCCGAGTT TGACTAAGAA ACGTGAGAAA AAATCCGATA AAGCAGGAAA AGTTCCTAGC
TTAGTGCCTT TGGCACAATT GGCTATGGCA ACTGAGCCTA ATGGTCGCCA GCAATTTTGG
ACGCGGGTTA AATTTGAAGT ACGGCAAGTA CTATTTACTG CGCCATTTGT GGTGTTAGGT
GTGCTGACTA TTTTCAATTT AGTCGGCCCC ATGTTCGATG ATTTTGGTTG GTACGGCACA
TCTAATTGGC CATTAACCCA AGATATGGTG AATAACATTG CCGGCGCGAC GGGGCTATTG
ATGGTGATAG TGCTGATTTA TTACAGCGCA GAAATCGTCT GGCGTGAACG CAGTTCAGGA
ATGGGAGATA TCGTCGATAG CGTTCCCGTA TCAAACTTAA GCTTTTGGGG CTCAAAGCTA
GTATCTGTGG TCATAGTGAT GACCTTGCTG TATGTGCTCG CCATGTGTAC CACAATTGCT
TTTCAACTGA TAAAAGGACA AGCCAATCTT GAGATTGCTC AGTACCTTAT TCGACTGGGA
TTTTATTACC TCCTGCCGCT GTTGATGACC GCTGTGCTGG CGTTTTTCCT GCAAGTACTT
AGCCCAAATA AGTACGCAGG TATGGGGTTA TTTGTTGCTT ATTATCTAAC GACATTTGTT
ATGGCAAGTT GGGGATTTGG CCATAGCTTA TATAACTTTG GTCAATCACC GACCTTAATT
TACTCGGATA TGAACGGCTA CGGTTGGGGC TTATTAAGTC ATGCACTCTA TATGATTTAC
TGGGGGGCTT TTAGCCTTAT CCTGTTTGTT TTAGGTTATG GCTTGTACCA TCGCGGACCG
CAGCAGAGCC TTAAAACCCG TATGGGATTA CTGAGTTATC AGCTTGGTTT TAGTGGCAAA
GCCATTGTGA GCGTTGCTTT GGTGGTGTTT TTGGGTATGG GCAGTTATTT GTTCTACCAA
ACAAAAGTGT TGAATCATTA TTTAACCCAA GATGAAACCA CAGATCTGCA AGCCGATTAT
GAGAAGGCCT TTAAACAATA TCAAAGCATG CCGATTTTAG TGGCCACTAA GGTCAATGCG
AATATTGATA TTTTCCCTGA AGAGCGAAAA ATTGTTGCTA AGGTGATATT CGAATGGCAA
AACAAGTCAG ATAAACCAAT CGAAAGGATG TTAGTGCAGT GGCCTGAGCA TACTGAGGCC
GAAACGGTAA AAATCAATAT CCCGAATACA AACTTAGGTG AGTTAGATAG CCGCTATCGC
AATGCTTGGT TGACCTTTTC GACACCTGTG CAGCCTGGAC AGGTGGTGCA AGGGGACATT
CAATTAGTAC GTCAGTCTGT GGGTATTGCT GAAGCTGGCT TTGATATGTC AGTGGTTGAA
AATGGCACCT TCATCAACAA CTTCGAACTA TTGCCTCTCT TTGGTTATCA AGATGGCTAT
GAGCTTATGG ATCGCCACGA GCGCCAAAAG CGCGATTTAG CCGAAAAAGC TCGAGCGAAC
AAGCTTGAAG ACAGCCGTTA CTACACGCAA AACTTCTTTG GTGTCGATGG TGATTTCATT
CAGTTTGAAG CCACTATTTC GACAAGTGCA GATCAAATTG CATTAGCGCC AGGGTATTTG
CAAAAACAGT GGCAGCAGGA TGGGCGTGAG TATTTCCATT ATTCGATGGA TAGCCCTATG
GTGAATTTCT ACGCGATTAT TTCGGGCCGT TATCAGGTGG AAAAAACTGA GCACAATGGT
GTTGCGGTTG AGGTTTACTA CCATGCGGAG CATCCTTGGA ACGTTGCGCG CATGATAGAG
TCGGTTAAAG ATTCTATCGA TTACTACACA CAAGCATTTG GGCCTTATCA GCATAAGCAA
ATGCGAATTA TGGAGTTTCC GGGTTACCGT AGTTTTGCAC AAAGTTTTGC TAATACAGTG
CCTTACTCAG AGCGTATTGG TTTTATTACT GATTTACGCA ATGAGGATAA TATCGATCCT
GTGTATTACG TCACAGCCCA TGAAGTGGCG CATCAATGGT GGGGACACCA AGTGGGAGCT
GCGGATGTGC AGGGCAGTGC TGTGATATCC GAAAGCTTAT CGCAGTATTC GGCGTTGATG
GTGCTGGAGA AAAAGTACGG CGATAAAATG ATCCGTAAAT TCTTGAAATA TGAATTAGAT
AGATATTTAC GTGGCCGTTC ATCTGAATCC ATCAAAGAAA TGCCTTTGCT GCGCAGTGAA
AATCAGCAGT ACATTCATTA TCAGAAAGGC TCAGTGGTGA TGATGGCCAT TAAAGATGTG
TTGGGTGAAG AGAAACTTAA CGCTAATTTG AAGGCATTCT TAGCACGTTA TCAATATCGT
AACGATCCTT TCCCAACCAC ATTGGATTTA GTGAGTTACC TTGAGCAAGG CACAAATGAA
GCGCAAACTC GCTTTATCGA TGAGTCTTTT AATGACATCA CACTCTACGA CTTCAGGTTA
ACCAATGCGG TCATGACCAC TCTGCCTGAT GGTAAGACGC AAGTTGACTT GAGCATTTAT
GCCAGTCGCA AAGTCGCGAG TGGTAAAGGT GAAGAAACCG AACAACCTTT AGATGCCATC
ATCGACATCG GTGCCTTTAG TGCCGATCCC GATAAGCTAA AGGATGACAA ACAGGTGTTA
TTGATTGAGA AGCATAGGCT GGTCAGTGGT GAAAACAAGC TGACGATCAC TTTGGCTGAA
AAACCCAGCT ATGTGGGGGT TGATCCCTTT GTGAAGCTCA TCGACAGAGA TACGAAGGAT
AATATCTTTA AACTCTAA
|
|---|
| Protein sequence | MLLSMLRFEW RYYLRQPSFY VVSFLLFLMS FLSVVSNNIQ IGSGGEVMKN SPFGITQTML
IMGLISMFAV VNFVGSTAIR NHQHLMEELI YSKPLSPFAY QFGRFLGSFV VVMMVFAFIP
IGLMLGSFMP WVDASRFGPF ALSNYLVPYF LLAMPTLLLI STLFYAMASH FRSLMALYLT
AVAMLVLYTL TGEMASQPQY RTIAALLDPF ALRTFAEVTR YWTISEKNSQ LIEFSGLVLQ
NRAIWFGIAC VLLAISGIFR QPSLTKKREK KSDKAGKVPS LVPLAQLAMA TEPNGRQQFW
TRVKFEVRQV LFTAPFVVLG VLTIFNLVGP MFDDFGWYGT SNWPLTQDMV NNIAGATGLL
MVIVLIYYSA EIVWRERSSG MGDIVDSVPV SNLSFWGSKL VSVVIVMTLL YVLAMCTTIA
FQLIKGQANL EIAQYLIRLG FYYLLPLLMT AVLAFFLQVL SPNKYAGMGL FVAYYLTTFV
MASWGFGHSL YNFGQSPTLI YSDMNGYGWG LLSHALYMIY WGAFSLILFV LGYGLYHRGP
QQSLKTRMGL LSYQLGFSGK AIVSVALVVF LGMGSYLFYQ TKVLNHYLTQ DETTDLQADY
EKAFKQYQSM PILVATKVNA NIDIFPEERK IVAKVIFEWQ NKSDKPIERM LVQWPEHTEA
ETVKINIPNT NLGELDSRYR NAWLTFSTPV QPGQVVQGDI QLVRQSVGIA EAGFDMSVVE
NGTFINNFEL LPLFGYQDGY ELMDRHERQK RDLAEKARAN KLEDSRYYTQ NFFGVDGDFI
QFEATISTSA DQIALAPGYL QKQWQQDGRE YFHYSMDSPM VNFYAIISGR YQVEKTEHNG
VAVEVYYHAE HPWNVARMIE SVKDSIDYYT QAFGPYQHKQ MRIMEFPGYR SFAQSFANTV
PYSERIGFIT DLRNEDNIDP VYYVTAHEVA HQWWGHQVGA ADVQGSAVIS ESLSQYSALM
VLEKKYGDKM IRKFLKYELD RYLRGRSSES IKEMPLLRSE NQQYIHYQKG SVVMMAIKDV
LGEEKLNANL KAFLARYQYR NDPFPTTLDL VSYLEQGTNE AQTRFIDESF NDITLYDFRL
TNAVMTTLPD GKTQVDLSIY ASRKVASGKG EETEQPLDAI IDIGAFSADP DKLKDDKQVL
LIEKHRLVSG ENKLTITLAE KPSYVGVDPF VKLIDRDTKD NIFKL
|
|---|
| |