| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1441 |
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| Symbol | |
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| ID | 5079691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 1637766 |
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| End bp | 1639742 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640498570 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001182965 |
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| Protein GI | 146292541 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGATTA AAACGAGTAT CAACCCACCG GTATTTTATT CATCGGTTTT TCTTATCACC
TTAATGGTGA TGATTTGCGC AGTGTGGCCA ACAGAGGCGA ATGCTTTTTT TAAATCAATG
CAGTCATGGA TAGAGATGAA AGCAGGTTGG CTTTATATCT TGAGTGTGGC TATTTTTTTA
ATTTTTATCA TTTTTGTGAT GGTGAGCCGT TTTGGTGATA TCAAACTTGG CCCCGATCAT
TCCGTGCCCG ATTATAGCTA TAAAAGCTGG ATTGCCATGT TGTTTTCGGC GGGGATGGGC
ATTGGCCTGA TGTTTTTTGG GGTGGCTGAG CCCGTAATGC ATTTTTTGGC ACCACCCGAT
GCGACTCCCG AAACCATTGC CGCCGCTAAA GAGGCAATGA AGATCACTTT CTTCCATTGG
GGGATTCACG CTTGGGCAAT CTATGGCGTG GTGGCGTTGA GCCTAGCCTA TTTTTCCTAT
CGCCATAAGT TACCCCTATT ACCCCGCAGT GCCCTGTATC CCTTAATTGG TGAGCGAATT
TATGGGCCTA TTGGTCATGC GGTCGATACC TTTGCCGTGC TCGGTACTAT GTTTGGTGTG
GCGACATCAC TGGGGTTTGG GGTGTTGCAG GTCAATTCAG GACTGAGTTA TCTGTTTACC
GACTTACCCA ATAACACTCT AGTGCAAGTG TCTCTCATCA TAGGTATTAC CTTATTAGCA
ACGCTTTCGG TGTTTTCTGG GCTCGACAAA GGGGTAAAGC GTTTGAGTGA GCTTAACCTT
GGTCTGGCGA TTTTACTCTT GTGTATTGTG TTAATCCTCG GTCCCACTGT GATGTTATTA
CAGGCTTTTG TGCAAAATAC CGGCGGATAT TTAAGTGATT TAGTGAATAA AACCTTTAAT
TTATATGCCT ATCAACAGAA GGAAGATTGG CTGGGTGGTT GGACATTACT CTATTGGGGG
TGGTGGATTT CATGGTCGCC ATTTGTTGGG ACTTTTATTG CGCGGGTGAG CCGTGGTCGA
ACAATCCGTG AGTTTTTAAT TGGTGTGTTA TTTGTGCCTT CGGCATTGAC CTTCCTATGG
ATGACAGTAT TTGGTAATTC GGCTATCAAC GCCATTATGC ATCAAGGGGC GACTTATTTG
GCTGAGGCGG TCAATACCGA TGTTTCTGTG GCGCTATTTG TGTTTTTTGA ACATATGCCA
TTTTCGACAT TGCTGTCAGG CATTGCGATT TGTTTAGTGG TGACTTTTTT CGTCACATCA
TCGGACTCTG GCTCCTTAGT CATTGATAAC TTGACCTCTG GCGGTGATAA CAATGCACCT
GTATGGCAGC GAGTATTTTG GGCATTACTT CAAGGTGTGG TGGCTTCAGT GCTGTTATTG
GCGGGGGGGC TACAGGCATT ACAAACCGCG GCAATTGCCA GTGCTATGCC ATTTTTAGTC
GTTATGTTAT TGATGTGCCT TGGTTTATAT AAAGCACTAA AAAATGATTG GCTTAAGATC
AACAGTGTAC AGATGCACAA TACTAGCGTG CAGTACGCCA AAACCAATAT CAGTTGGGAG
GAGCGTATTG AAGTGCTAGT GTCACATCCG ACAGAGGAAG ACGCGCGGGT CTTTATCAAT
AATGTGGCGA CCCCTGCATT ATCAAAAGTC TGTCAGCGTT TTATGAGCAA AGGTATTGTC
GCTGATCTCG AATACATCGA GGGAAAAGTC AGGCTCGTTG TCAGTAATGA AGTTAACTTA
CCCTTTGTAT ACGGTGTACG TTTGCGTTGT TTTGAGATTG TAAACCCGAT AGGGGAAGAG
CTAGAGCAAG GGAATACGTC GTACTATCGC GCTGAGGTTT ACCTTGAGCA GGGTGGGCAG
CATTACGATG TAATGGGTTA TACCGAAGAG CAAATCTTGG CGGATGTCGT TACCCAATAT
GAAAAATATT TGCACTATCT ACATCTTTCT AGCGCTGATC AGGGGCATGT TGCATAA
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| Protein sequence | MSIKTSINPP VFYSSVFLIT LMVMICAVWP TEANAFFKSM QSWIEMKAGW LYILSVAIFL
IFIIFVMVSR FGDIKLGPDH SVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHFLAPPD
ATPETIAAAK EAMKITFFHW GIHAWAIYGV VALSLAYFSY RHKLPLLPRS ALYPLIGERI
YGPIGHAVDT FAVLGTMFGV ATSLGFGVLQ VNSGLSYLFT DLPNNTLVQV SLIIGITLLA
TLSVFSGLDK GVKRLSELNL GLAILLLCIV LILGPTVMLL QAFVQNTGGY LSDLVNKTFN
LYAYQQKEDW LGGWTLLYWG WWISWSPFVG TFIARVSRGR TIREFLIGVL FVPSALTFLW
MTVFGNSAIN AIMHQGATYL AEAVNTDVSV ALFVFFEHMP FSTLLSGIAI CLVVTFFVTS
SDSGSLVIDN LTSGGDNNAP VWQRVFWALL QGVVASVLLL AGGLQALQTA AIASAMPFLV
VMLLMCLGLY KALKNDWLKI NSVQMHNTSV QYAKTNISWE ERIEVLVSHP TEEDARVFIN
NVATPALSKV CQRFMSKGIV ADLEYIEGKV RLVVSNEVNL PFVYGVRLRC FEIVNPIGEE
LEQGNTSYYR AEVYLEQGGQ HYDVMGYTEE QILADVVTQY EKYLHYLHLS SADQGHVA
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