| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1434 |
|---|
| Symbol | |
|---|
| ID | 5079684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1628236 |
|---|
| End bp | 1630494 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640498563 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001182958 |
|---|
| Protein GI | 146292534 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4590] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGTC AGGTCACTCA ACCTGGTTCT GCGTCTCACA ATATGTTGAA AGGTGGACGT
TCAAGTCGCA GGGCATTTAA GGATAAAGCG GCTCAAATTG GGGTCACTAT TGGCGGCACT
ATGGTGTTTG TCGCCCTATT GTTGATCTTC TTTTATTTGC TGTATGTGAT AAAACCCATT
TTTGATAGTG CGGATGTGAC GCCTATAAAA ACGGTGAGTT ATCAGCATGC CGATACTGCG
ACGCTTATGG TTGGCGTCGA TGAACAAAAT GAGGTCATGT ACCGTGTCTC CGTTGATGGT
CAAGTGGATT TTTACACTGT GGCTGACGGC AGTTTGCTCT CATCTTTTTC GCAGTCACTA
CCAGAGGGCG TGACAGTGAC AAGTGCTGCG GTAGCTGCAC CGAGTGAACA ACGCTTCGCA
CTAGGATTAA GCAATGGTCA AGCTTTGATA GTGGGGATTG AGTTTGGTTT AACTTACCCA
AATAACAAGC GCTTGATCAC CCCTAAATTA CGTTACCCTG CTGGCGAAGC CCCTGTCACT
ATTGACGAGT CAGGTGCGGC AATTACCAAA CTTACTTTTA TTTATAGCTC AGATAAGATG
AGCTTTGCCT ATAAAGATCA TCTTGGGATT TGGCGTTTAA GCCGCCTCGA AGGTCAAGAG
AATCTGATGA CTGAGCAGGT TGAATGGACG ACTACGACGT CGATTATTCA AGATGCACCT
AAAAAAGTGG CTCAGCAGTT GATGACGCCA GACCAACGTC AGTTGATGTT GCAAATGGGC
AACAAAGTCT TTGTATACGA TATCCGTGAT GCTGAAAATA TTGAATTAAT GCAAGTGATT
GATGCTGAGA AGGATAAGTC AAAGGTGAAT CAGATAGCGC TGTTAGCGGG CGCTAGCTCT
ATTTTAGTCA GCTATGACTC AGGTGTGGTT GCTCAGTACT TTCAAGTCAA TGGTCCTAAA
GGTCGCTTAT ATCAGGAAAT CCGTGAGTTT AATGACTTAC CTCCTATTGC TTCTATCGCC
TCTGAATTTT ACCGTAAGAG TTTTGCCGTA ATCAGCCCAG AAGGGGAGTT GTCATTACTC
TACACCACAA GCCATCGTGA ACTCTTTGAC GAAAAATTTG ATCTTAAAAA CCCCGGTATG
ATGGGTTTTA GCCCTCGCTC AAATAGCTTA GTGGTTGAAG CGGATAAGAA GCTACATATC
TTCAGTGTGG AGAACTCCCA CCCTGAAGTG TCATGGACCG CTATGTGGAA CAAGGTTTGG
TACGAAGGTT ATCCTGAGCC TAAATTTGTA TGGCAATCCA CCTCTGGCTC CGATGACTTT
GAGGCCAAGT TAAGTTTAAT GCCATTAGCC TTTGGTACGA TGAAAGCGGC ACTTTATGCC
ATGTTGTTTG CGGTGCCATT ATCCATTGCT GGCGCTATTT ATACGGCTTA CTTTATGTCA
CCTAAAGTGC GCGCTTTAGT TAAACCAACA ATTGAAATTA TGGAAGCTTT GCCAACGGTG
ATTTTAGGTT TCTTGGCGGG ACTCTGGTTG GCGCCGCTGA TAGAGGAGCA TTTACCCGGT
ATTTTAATTC TGTTGGTGTT ATTGCCGACA TCTATCCTGA CCTCAGCCTA TGCTTGGAGT
CGATTACCAG TCCAATGGAA ACAGCGTTTG CCCGAGGTAT ATCAAGAGCT TATGCTTATC
CCCGTGATTT GTTTTATCGG TTGGTTCTCC TTTGCCATTA GTCCGATGAT TGAAGTCGCC
CTGTTCGATG GTAACACCCG TCAGTTTATC ACTAATGAGC TGGGTATCAC CTTCGATCAA
CGTAACGCGC TGGTAGTGGG TATCGCCATG GGCTTTGCGG TGATACCAAC CATTTTCTCG
ATTGCTGAGG ATGCCATTTT TTCTGTACCT CGCCATCTTT CAAACGGCAG TTTGGCGCTA
GGTGCTACAC CTTGGCAAAC CTTAACGCGA GTGGTGCTAT TAACCGCAAG TCCTGGGATT
TTCTCCGCGG TAATGATGGG GCTAGGGCGC GCTGTGGGCG AAACCATGAT TGTACTGATG
GCAACAGGTA ATACCGCGAT TATGGAATGG AGCGTGTTTG AAGGTATGCG TACCTTGGCT
GCGAACATTG CAGTAGAAAT GCCAGAGTCG GCGATTGGTA GCTCCCATTA TCGTGTGCTC
TTCCTCGCGG CATTTGTGTT GTTCGTATTT ACCTTCTTCT TTAACACCAT TGCTGAAGTG
GTGAGACAGC GTCTACGTGA CCGCTATAGC TCGCTGTAA
|
|---|
| Protein sequence | MESQVTQPGS ASHNMLKGGR SSRRAFKDKA AQIGVTIGGT MVFVALLLIF FYLLYVIKPI
FDSADVTPIK TVSYQHADTA TLMVGVDEQN EVMYRVSVDG QVDFYTVADG SLLSSFSQSL
PEGVTVTSAA VAAPSEQRFA LGLSNGQALI VGIEFGLTYP NNKRLITPKL RYPAGEAPVT
IDESGAAITK LTFIYSSDKM SFAYKDHLGI WRLSRLEGQE NLMTEQVEWT TTTSIIQDAP
KKVAQQLMTP DQRQLMLQMG NKVFVYDIRD AENIELMQVI DAEKDKSKVN QIALLAGASS
ILVSYDSGVV AQYFQVNGPK GRLYQEIREF NDLPPIASIA SEFYRKSFAV ISPEGELSLL
YTTSHRELFD EKFDLKNPGM MGFSPRSNSL VVEADKKLHI FSVENSHPEV SWTAMWNKVW
YEGYPEPKFV WQSTSGSDDF EAKLSLMPLA FGTMKAALYA MLFAVPLSIA GAIYTAYFMS
PKVRALVKPT IEIMEALPTV ILGFLAGLWL APLIEEHLPG ILILLVLLPT SILTSAYAWS
RLPVQWKQRL PEVYQELMLI PVICFIGWFS FAISPMIEVA LFDGNTRQFI TNELGITFDQ
RNALVVGIAM GFAVIPTIFS IAEDAIFSVP RHLSNGSLAL GATPWQTLTR VVLLTASPGI
FSAVMMGLGR AVGETMIVLM ATGNTAIMEW SVFEGMRTLA ANIAVEMPES AIGSSHYRVL
FLAAFVLFVF TFFFNTIAEV VRQRLRDRYS SL
|
|---|
| |