| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1415 |
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| Symbol | |
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| ID | 5079665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 1607003 |
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| End bp | 1610281 |
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| Gene Length | 3279 bp |
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| Protein Length | 1092 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640498544 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_001182939 |
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| Protein GI | 146292515 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.931625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAACC CTATGAGTGA CAGCACATTT TTCTTTGGTG AATGGCAAGT TAATCCCAGC
GCCAACAGTC TGCTCCTCGG TAAACAAGTC AAACAACTTG AACCTAAGGC CATGGATGTG
CTGCTATTTC TCTGTCAACG GGCAAACGAA GTGGTGAGCA GTGATGAGAT TGTCAGTCAT
TGCTGGCAAG GGATAGATAC GGGTGATAAT CCACTACACA AGATTATCAA CCAGCTACGC
CGCGCATTAG GCGATAGTGC CACCGAGTCC ACTTATATTG AAACCATTCG CAAACGTGGT
TATCGCACCT TAGCCGAAGT GCGTTTTCCC GTGGGACACG AAGCCACCGC CAGCCCACAA
ACTTGGCAAG GCGGCTCACC TTTTCCCGGG CTACAAGCCT ATAGCGCCAA CTATGCCGAG
GTGTTTTTTG GCCGTAGCGA ACAAATCACC ACCTTACTTA ACCGCATTAG CCAGCAAATC
CATTTTGGCC GTGCCTTCTG TCTGATTTTA GGCCCCAGTG GCAGCGGTAA ATCCTCCTTA
ATTAATGCGG GGGTATTACC CAATTTAATG AAGGGAAATG GCTTTAATGG CGTCGGTGTT
GTGGCCTATA GCAGCCTCGA TTTTGCCGAT GTCAGCAAAG GGCAACTGCT CACCGATCTG
GCCAGTGCCA TGCTCGACTG GGAGATAAAC GACACCCCAG TATTTGATGG GATGAGCGCC
GATACGTTGG CAATCAAGCT TACTGAAGAT ATCCAAGATA TTATCGCGCA GTGCAAACAA
GCACTTAAAA ATCAGCCCTA TGCAACGCCG CGTTTCGCCT TATTTATCGA CCGATTAGAA
GTGTTGCTCT CATCACCGCT ATTTAGCGAT ACCGAACGAA CCCAGTTCAT AGAATTATTG
GAACAACTCG CCACCTCAAA AGCCGTGATT ATCATCAGTG CCTGTCGCAA CGATTTTTAT
CCTTTATTGG TCAATTACCC AAGCTTAATG GCGGGTAAAG CCCGCGGCGC CCACTTTGAC
TTAGCACCGC CAACACGCAC TGAGCTATTA CAAATGATCC GCCTGCCCGC AGTGGCTGCC
AACTTAAGCT GGGAAGTTGA CAGCGACACC GCAATGCCGC TCGACGAAAT GCTCTGCAGC
GATGCCGCCA GCAACCCAGA TGCGCTGCCC ATGTTGCAAT ACACTCTGCA AGCCTTGTAT
TTGCAACGCA GCGCCGACGA TAAGTTATTA GTCTCGGTTT ATCATGCACT TGGCGGTATT
GAAGGGGCTA TTGGCAAAAA TGCCGAGCAA GCGATTTCCC ATTTAAGCGA GGCCGAAAAA
GCCAGCCTAC CACGGATTTT ATCCCTGCTA GTGACCCTGC GCGAAGATGA AAAGTCCATT
ACTAGCCGCA CCGCCCGCTG GTCGCAGCTG CAAAGTACAG CTGAAACCGC CCTAGTGCAA
GCCATGGTCG ATAGCCGCTT ATTCGTGTCG CATCTGCAAA ATGGTGAACC CTGTTTTAGC
ATCGCCCACG AAGCACTTTT ACGCCGTTGG CCGCGGGCAA CCGCTTGGAT TAGCGAACAT
AACGACAGCT TAAGCATTAA GAGTCGCCTA CAACATTTAT CTAAACGCTG GCTCAGTGAA
GCCAAGCACA GCGCTTATCT GCTCGCCGAT GGCAAACCGT TAAAAGAAGC CCAAAGCCTC
AGTCAGAATC CGTTATTCGA TTTAGACGAT CCCGAAACCG CCTTTATCGC AGCCTCCAGC
AAACGCGCCA ATATGCTGCG CTGGACAAGG CGCCTAACCG TCGCCCTGCT GTGCGTCCTC
ACCTTAACCT CAGTCATTAT GAGCGTTCGC AGCATAGAAG CCGAAAAACT TGCCCTGCAA
AAACGCCTCG CCGCCGAAGA TTTGCTCGGC TTTATGGTCG GTGACTTCGC CGACAAGATG
CGCGGCATCG GCCGTATGGA TTTACTCGAT GGTATCAGTA ACAAGGCGCT GGCCTATTTC
AGCGATTTTT CCCATCAAGA TGATGATGCA CATTTAAGTT TTGATGCCCG TTTCCAACAC
GGCCAAACCC TAGAGGCGAT GGGCGAAGTG GCCTATTCGC GTAATAAAAT CGATGAAGCC
CGTAGCGCCC TACTCGCCGC GCAGGAGAAA ATGCTGCCGC TATTGAATTT GCAACCAAAC
AACCTAGCCC TACTGAAAAC CCTAGGCGCC AATGCATTTT GGCTCGGACA ACTTAAATAT
GATGTTAGCG ACTGGGCTGC ATCGCGCCCT TTTTTCGAGC AATACTTAGC CTATAGCCAA
ACTATGTACG CCCTTGCACC CGAAGATAAA GATGCGCTCA TGGAACTTTC TTACGCCCAT
AACACTTTGG GCTCAGTTTC GATGAAGCAA CAGGAATTTG CCAAAGCACA ACAAGATTTT
GAAGAGTCGC TAAGGCTTAA ATTGCTCGCC TTGGCAAAAG CGCCTCAAGA TAGCCAGCTG
ATTGCGGATA TTGCGAATGC ACGATCTTGG TTAGCGAGTG CGGCAGTGTC TCTTGGGGAT
TTAAACTCTG CAATTACAAT TAACTTACAA CTGCAATCGG AATTAGAAGC CCAACGTAAG
TTAAAAGATG CAGACGGATA TTTACTTGAC AGGCTATCTA TTGGATATCA GAGACTTTCA
TTTTTATATG AATATCAAGG ACAACTAAGC CTAGCTTTCG ATAATGCATT ACAAGGCGAA
CGAGTTATAC AACAAGCTTT AAATTTAGAT AACCAAAATA CTTCATGGAA AGTAAAACTA
TACTATCTAA AACTCCAACT AATGTTACTT AATGCAAATA TTCAAGATAA ACGAGTTCTA
TACACACCTG AAACATTAGA TGTAGAACTA GCTAGCGAAA GTGAAAGCTT TATAAAGAGT
AAACGTTACC AACAACTTAA GGCCACCCAC CTTAAAAACT CAGCTTATTA CTACCAAATA
CTTGAACAAC CTAAAAAGGC ACTAGTATAT TTAGATAAAG CATTTTTGTT ACTCAAAGAC
TTAATTAAAG ATGCTCCAAA TGATTATAAA CACTATGCTA GCCTAGCTGA AACTGAACTA
TTAATAGCTA AACAATCAAA AAATATAAAC GACCTTAACT CAATGAAAAA ATATTGTCTA
AGCGCAAAGA GAAGACTAGA GTCCATTCAA AAAAAAGATA AAGACCCTCA ATACTTATAC
CCTTATGCAA AAGCCTTAGA TTGTTTAGGA GAGTTAGAGA CTTCCCCTAC ATTACTTAAG
CAACTTAAAG CAGCGTCAAT TAAAGATATT AAATTTTAA
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| Protein sequence | MENPMSDSTF FFGEWQVNPS ANSLLLGKQV KQLEPKAMDV LLFLCQRANE VVSSDEIVSH
CWQGIDTGDN PLHKIINQLR RALGDSATES TYIETIRKRG YRTLAEVRFP VGHEATASPQ
TWQGGSPFPG LQAYSANYAE VFFGRSEQIT TLLNRISQQI HFGRAFCLIL GPSGSGKSSL
INAGVLPNLM KGNGFNGVGV VAYSSLDFAD VSKGQLLTDL ASAMLDWEIN DTPVFDGMSA
DTLAIKLTED IQDIIAQCKQ ALKNQPYATP RFALFIDRLE VLLSSPLFSD TERTQFIELL
EQLATSKAVI IISACRNDFY PLLVNYPSLM AGKARGAHFD LAPPTRTELL QMIRLPAVAA
NLSWEVDSDT AMPLDEMLCS DAASNPDALP MLQYTLQALY LQRSADDKLL VSVYHALGGI
EGAIGKNAEQ AISHLSEAEK ASLPRILSLL VTLREDEKSI TSRTARWSQL QSTAETALVQ
AMVDSRLFVS HLQNGEPCFS IAHEALLRRW PRATAWISEH NDSLSIKSRL QHLSKRWLSE
AKHSAYLLAD GKPLKEAQSL SQNPLFDLDD PETAFIAASS KRANMLRWTR RLTVALLCVL
TLTSVIMSVR SIEAEKLALQ KRLAAEDLLG FMVGDFADKM RGIGRMDLLD GISNKALAYF
SDFSHQDDDA HLSFDARFQH GQTLEAMGEV AYSRNKIDEA RSALLAAQEK MLPLLNLQPN
NLALLKTLGA NAFWLGQLKY DVSDWAASRP FFEQYLAYSQ TMYALAPEDK DALMELSYAH
NTLGSVSMKQ QEFAKAQQDF EESLRLKLLA LAKAPQDSQL IADIANARSW LASAAVSLGD
LNSAITINLQ LQSELEAQRK LKDADGYLLD RLSIGYQRLS FLYEYQGQLS LAFDNALQGE
RVIQQALNLD NQNTSWKVKL YYLKLQLMLL NANIQDKRVL YTPETLDVEL ASESESFIKS
KRYQQLKATH LKNSAYYYQI LEQPKKALVY LDKAFLLLKD LIKDAPNDYK HYASLAETEL
LIAKQSKNIN DLNSMKKYCL SAKRRLESIQ KKDKDPQYLY PYAKALDCLG ELETSPTLLK
QLKAASIKDI KF
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