Gene Sputcn32_1392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1392 
Symbol 
ID5080587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand+ 
Start bp1580321 
End bp1580968 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content40% 
IMG OID640498523 
Productouter membrane protein W 
Protein accessionYP_001182918 
Protein GI146292494 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00591184 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAATA AAAATATCGT TTCTACTGTT ATCGCTGCGA CCCTTTTAGC CGCTGGTTTT 
ACTGCTTCTG TCTCTGCTCA TCAAGCCGGT GATATTATCG TGCGTGCGGG TGCCGTAGTT 
GTTGCCCCAA ATGAATCAAG TGATCCAGTT GCTACTTTTG GTGAGTTTAA AGTCAATAAT 
AATACTCAAG TTGGTCTGAA CTTTGGTTAT ATGTTGACCG ATAACATTGG GGTTGAGTTA 
TTGGCAGCGA CGCCATTTAG TCATGATGTA TCACTCGCGG GTGTGGGTAA GATTGCTGAA 
ACGAAACATT TACCACCAAC CTTAGTGATT CAATATTATT TTGGTGACGC ACAATCAAAA 
TTACGCCCTT ATATTGGTGC AGGCGTGAAC TACACAAAGT TCTTTGATAA TAAGTTCACT 
AATGATTTAA ATGGGGCTTT AACTGATTTA GATATGAGTG ATTCTTGGGG ACTTGCAGCG 
CAGGTTGGCT TAGATTATCA AGTCAATAAA AACTGGTTGG TCAATGGATC AGTTTGGTAT 
GCCAAGATAG ACACTGATGT GAAATTTAAA TTGGGTGGGG CACCCGTTAC TATCGAAACA 
GATATTGACC CATGGGTTTA TATGGTTAGC GTTGGCTACA CTTTCTAA
 
Protein sequence
MMNKNIVSTV IAATLLAAGF TASVSAHQAG DIIVRAGAVV VAPNESSDPV ATFGEFKVNN 
NTQVGLNFGY MLTDNIGVEL LAATPFSHDV SLAGVGKIAE TKHLPPTLVI QYYFGDAQSK 
LRPYIGAGVN YTKFFDNKFT NDLNGALTDL DMSDSWGLAA QVGLDYQVNK NWLVNGSVWY 
AKIDTDVKFK LGGAPVTIET DIDPWVYMVS VGYTF