Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1363 |
Symbol | dnaE |
ID | 5080558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1544202 |
End bp | 1547675 |
Gene Length | 3474 bp |
Protein Length | 1157 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640498495 |
Product | DNA polymerase III subunit alpha |
Protein accession | YP_001182890 |
Protein GI | 146292466 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGATC CTCGTTTTGT GCATCTTCGT GTCCACAGTG ACTTTTCTAT GTCCGATGGC GTAGCCAAAG TTAAACCTAT TCTTGCCCAA GTTGAGGCGT TAGGTATGGC TGCGGTCGCC TTGACGGATC AAAACAACTT CTGTGGATTA GTAAAGTTTT ACAGTGGCTG CCATGGTGCG GGGATTAAGC CCATTATTGG TGCCGATTTT TGGATGCAAG TGCCTGGGTT TGAAGGTGAA TTCTGTGCGT TAACCATTAT CGCAATGAAC AACGTGGGTT ATCAAAATCT CACTCAAATT ATCAGCCAAG CCTATTTGCG GGGGCAGGTG GCGGGTCGAG TGGTGATCGA TCAAGAGTGG TTACTGACCT ATAACGAAGG CATATTATTG CTTTCTGGCG CTAAGGAAGG TGATATTGGT AAGGCGTTAC TTAAGGGGAA TAATACTCAA GTTGAATCCC TTTGTGAGTT TTATCAAACC CATTTCGCTG AACGCTACTT TTTAGAGCTA ATCCGCACGG GTCGACCCGA TGAAGAGCGT TATTTGCATA TGGCCGTTGT GTTGGCGCAG GAAAAAGGCT TCCCGGTTGT GGCCACCAAT CAGGTCGTGT TTTTAAAACC CGAAGATTTC GACGCCCACG AAATTCGCGT GGCTATCCAT GATGGCTTTA CTCTTGCGGA TCCCCGCCGT CCTAAAAAGT ACAGTGAGCA GCAATACTTA CGTAGTGAAG AGGAAATGTG CGAGCTATTT GCTGACATTC CTGCCGCACT TTCTAATACG GTTGAAATCG CTAAACGCTG TAATGTGACA ATTCGTTTAT ACGAGTATTT TCTGCCTAAC TTCCCTACGG GCGATATGTC CATCGAAGAC TTTTTGGTGG ATTGTTCGAA GAAGGGTCTC GAGGAGCGCC TCGCGTTTTT ATTTCCCGAT CCACAGGTTC GTGCCGAGCG CCGCGGCGAA TACGATGAGC GCCTAGATAT CGAATTGCAA GTGATCAACC AAATGGGTTT CCCCGGTTAC TTCTTGATCG TGATGGAGTT TATCCAATGG GGTAAGGATA ATGGGATTCC TGTAGGGCCG GGCCGTGGGT CGGGTGCGGG TTCGCTTGTT GCCTATGCTC TTAAAATTAC TGACTTAGAT CCGCTTGAAT TTGACTTGCT GTTCGAACGA TTCCTCAACC CCGAGCGGGT TTCTATGCCC GACTTTGACG TCGACTTCTG TATGGATAGA CGGGACGAGG TGATAGACCA TGTGGCCGAG TTATACGGCC GTGAAGCGGT GTCGCAAATC ATCACCTTCG GTACTATGGC CGCAAAAGCG GTTATTCGCG ACGTTGGCCG CGTACTAGGT CATCCCTATG GTTTTGTTGA CCGTATTTCA AAACTTATTC CCCCTGAGCC TGGAATGACA CTGGCTAAAG CCTTTGAGGT CGAACCTGCG CTGCAGGAGT CCTACGACGC CGATGAAGAT GTTAAAGATC TTATCGACAT GTGTCGTAAA CTTGAGGGCG TGACTCGTAA CGCAGGTAAG CATGCGGGTG GGGTGGTAAT TGCACCCACT AAAATTACCG ATTTTGCACC ACTTTATTGT GATGCAGAGG GTAAAAACCC AGTAACACAA TTCGATAAAA ACGATGTGGA AACCGCAGGC CTTGTGAAGT TTGACTTCTT GGGGCTACGT ACCCTCACGA TTGTCGATTG GGCGCTGGAG ATGATCAACA AAGTGGAGGT CAAAAATGGC CGCCCTCCTG TACGTATCGA GGCAATTCCT TTAGACGATC CTGCCTCGTT TCGATTATTA CAGCGTTATG AAACCACCGC TGTTTTTCAG CTTGAATCCC GCGGTATGAA GGATTTGATT AAGCGACTTC AACCGGATTG CTTCGAGGAT ATGATCGCGC TTGTCGCCCT GTTCCGTCCT GGGCCTTTGC AATCGGGCAT GGTGGATAAC TTTATCGAGC GTAAGCATGG CCGCGAGGAA GTGTCTTACC CAGATTCCCA ATACCAGCAC GAATCCTTAA AGGAATTACT CTCACCTACC TATGGCATTA TCTTGTATCA AGAGCAGGTC ATGCAGATAG CGCAGGTGCT TTCTGGCTAC ACTCTAGGCG GCGCCGATAT GCTTCGCCGT GCCATGGGTA AGAAAAAACC TGAAGAGATG GCTAAACAGC GTAGCATCTT TAAAGAGGGT GCGATTAAAA ATGGCGTCGA CGGTGAGTTG TCGATGAAAA TCTTCGACTT AGTGGAAAAG TTCGCCGGTT ATGGTTTTAA CAAATCCCAC TCCGCCGCTT ATGCCTTGGT TTCCTATCAA ACCTTGTGGT TGAAAACCCA TTACCCTTCA CAGTTTATGG CGGCGGTGAT GTCCGCGGAT ATGGATAACA CCGACAAGAT AGTGACACTG GTTGATGAGT GCGAACGCAT GGGGCTCACT CTGATCCCGC CCGATGTGAA CAAAGGGCTA TTTAAATTTA CTGTCGATGA TGATCTGCGA ATTGTTTATG GTATCGGTGC CATTAAAGGT GTGGGTGAGG GCCCTGTTGA GTCGATTTTA GAGGCGCGTA AAGATGGCCC CTTTGTTGAT TTATTCGATT TCTGTGCCCG TATCGACCTG AAAAAACTCA ATAAACGTGT GATTGAAAAG CTTATCTGCG CGGGTGCCTT AGATTCCCTC GGACCGCATC GCGCTTCGAT GATGGCGACC TTACCCGAAG CGATGCGCGC CGCCGATCAA CATGCCAAAG CGCAGGCAAT CGGTCAGCAC GATATGTTTG GCCTGCTCAA TAGCGAGCCG GAAGATAGCA AACAACAGTT TGTGGAATGT ACCCCATGGC CAGATAAAAT TTGGCTTGAG GGAGAGCGTG AAACTTTAGG GTTATATTTA ACAGGTCACC CTATTAATCA ATATCTTAAA GAACTTAAGT ACTATACTTC AGGGCGCTTA AAAGATGTGC ATCCTACTGA ACGTGGTAAA ACGGTAAAGG CCGCAGGTTT AGTTGTCGCG ACTAGGGTGA TGCTGACCAA ACGCGGTTCA AAGATGGGAT TGTTGACACT CGATGACAAG AGTGCGCGCC TCGAGGTGAT GTTATTTACC GAAGCCTTTG AGAAATTTAA TCACTTGCTC GAGAAAGATA GGATCCTTAT CTGCGAAGGT GAAGTAAGTT TTGATGATTT TGCTGGTGGT AATCGGATGA CTGCTCGCAA TATTATTGAT ATTGGTGAGG CGCGTAGCCA TTTTGCTAAG GCGCTTGAAG TCGACCTTGA TGCCGAGAAG TTAACTCCTG CGGTTTTAGA CAGTATTGAA CAAGCCATGA GCCCTTGGCG AAGTGGTGCT GTGCCAGTAC TCATTAATTA CAGTCAAACT CAGGCTAAAG GACAATTTAG ACTTGCTGAG AGTTGGCGAG TTAACCCTTC TGATGAATTA GTCTTCGCCC TTGAAAGTTT ACTTGGCCCA AATAAAGTTA GGATCGTGTT TTGA
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Protein sequence | MSDPRFVHLR VHSDFSMSDG VAKVKPILAQ VEALGMAAVA LTDQNNFCGL VKFYSGCHGA GIKPIIGADF WMQVPGFEGE FCALTIIAMN NVGYQNLTQI ISQAYLRGQV AGRVVIDQEW LLTYNEGILL LSGAKEGDIG KALLKGNNTQ VESLCEFYQT HFAERYFLEL IRTGRPDEER YLHMAVVLAQ EKGFPVVATN QVVFLKPEDF DAHEIRVAIH DGFTLADPRR PKKYSEQQYL RSEEEMCELF ADIPAALSNT VEIAKRCNVT IRLYEYFLPN FPTGDMSIED FLVDCSKKGL EERLAFLFPD PQVRAERRGE YDERLDIELQ VINQMGFPGY FLIVMEFIQW GKDNGIPVGP GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE LYGREAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPEPGMT LAKAFEVEPA LQESYDADED VKDLIDMCRK LEGVTRNAGK HAGGVVIAPT KITDFAPLYC DAEGKNPVTQ FDKNDVETAG LVKFDFLGLR TLTIVDWALE MINKVEVKNG RPPVRIEAIP LDDPASFRLL QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE VSYPDSQYQH ESLKELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM AKQRSIFKEG AIKNGVDGEL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHYPS QFMAAVMSAD MDNTDKIVTL VDECERMGLT LIPPDVNKGL FKFTVDDDLR IVYGIGAIKG VGEGPVESIL EARKDGPFVD LFDFCARIDL KKLNKRVIEK LICAGALDSL GPHRASMMAT LPEAMRAADQ HAKAQAIGQH DMFGLLNSEP EDSKQQFVEC TPWPDKIWLE GERETLGLYL TGHPINQYLK ELKYYTSGRL KDVHPTERGK TVKAAGLVVA TRVMLTKRGS KMGLLTLDDK SARLEVMLFT EAFEKFNHLL EKDRILICEG EVSFDDFAGG NRMTARNIID IGEARSHFAK ALEVDLDAEK LTPAVLDSIE QAMSPWRSGA VPVLINYSQT QAKGQFRLAE SWRVNPSDEL VFALESLLGP NKVRIVF
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