Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1354 |
Symbol | |
ID | 5080549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1534217 |
End bp | 1535398 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640498486 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_001182881 |
Protein GI | 146292457 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000989089 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGATTC TGGGTGCGAC AGGCTCGATT GGCGCCAGTA CCTTAAGTGT GATTTCGGCT AATCCATTGG CTTATTGCGT TTATGGCTTA GTGGCTAATG CGAGTGTGGA TAAAATGCTG GCATTATGCA TTACCCACCA ACCTAAAGTT GCTCATATGG TCGATGCTGT CGCGGCAAAG GCATTACGAG CTCAGCTTCC TGCTGCGCTT AATATCCAAG TGACAACGGG TAACGATGAG CTTCTGGCGT TAGTGACCTC ATCAAAGGTC GATACCGTTA TGGCGGCCAT TGTTGGCGCT GCTGGGTTAG TTCCGACGCT TGCTGCCGTT AATGCGGGCA AACGAGTATT GCTAGCCAAT AAAGAAGCCT TAGTTATGTC GGGTGAGTTG TTTATCGAGG CGACTAAGCG TTCAGGCGCA ACTTTACTGC CTGTAGACAG CGAACATAAT GCGATTTTTC AATGTTTACC CCAAGAGGTA CAGGCTAATC TTGGTCGTTG TGATTTAGCC GCATCCGGTA TTTCCCATAT TCTGCTAACG GGTTCTGGTG GACCATTTTT ACGTTCAGAT TTAGCAACAC TTGCGGCCAT GACACCCGCA CAGGCCTGTA AACATCCTAA TTGGTCTATG GGACCTAAAA TCTCTGTCGA TTCGGCGACT ATGATGAATA AGGGATTAGA GTTCATTGAG GCGCGCTGGT TGTTTAATAC GCAAGCTAAC CAACTTAAAG TGGTTGTTCA TCCGCAGAGT GTTATCCATT CAATGGTGCA ATATATTGAT GGCTCTGTTA TTGCACAAAT GGGAAACCCT GACATGCGGA CACCGATTGC CCATTGCATG GCCTATCCAC AAAGAATTCA CTCTGGTGTT GAACCTTTAG ATTTTTTCAA AGTCGGACAG TTAAGCTTTT ATGAACCTGA TTTTGAGCGT TTTCCCTGTT TGGCGCTGGC TATGGCAGCC TGTGCCCAAG GCCAAGAGGC GACAACGGTA CTCAATGCGG CGAATGAGAT CGCGGTTGAG GCTTTTTTAC AAGGACAAAT AGGCTTTACG CAAATTGCTA AAGTGAATGA AACTTGCTTA GCATTCGTCC CGAGTGGAAC TATGACCAGC ATTGAAGATA TTATCGCGTT AGATACGCAA AGTCGCATTT ATGCGCGGGA AACTTTAGCT AAGATCGCTT AA
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Protein sequence | MVILGATGSI GASTLSVISA NPLAYCVYGL VANASVDKML ALCITHQPKV AHMVDAVAAK ALRAQLPAAL NIQVTTGNDE LLALVTSSKV DTVMAAIVGA AGLVPTLAAV NAGKRVLLAN KEALVMSGEL FIEATKRSGA TLLPVDSEHN AIFQCLPQEV QANLGRCDLA ASGISHILLT GSGGPFLRSD LATLAAMTPA QACKHPNWSM GPKISVDSAT MMNKGLEFIE ARWLFNTQAN QLKVVVHPQS VIHSMVQYID GSVIAQMGNP DMRTPIAHCM AYPQRIHSGV EPLDFFKVGQ LSFYEPDFER FPCLALAMAA CAQGQEATTV LNAANEIAVE AFLQGQIGFT QIAKVNETCL AFVPSGTMTS IEDIIALDTQ SRIYARETLA KIA
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