Gene Sputcn32_1354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1354 
Symbol 
ID5080549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp1534217 
End bp1535398 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content46% 
IMG OID640498486 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_001182881 
Protein GI146292457 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000989089 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGATTC TGGGTGCGAC AGGCTCGATT GGCGCCAGTA CCTTAAGTGT GATTTCGGCT 
AATCCATTGG CTTATTGCGT TTATGGCTTA GTGGCTAATG CGAGTGTGGA TAAAATGCTG
GCATTATGCA TTACCCACCA ACCTAAAGTT GCTCATATGG TCGATGCTGT CGCGGCAAAG
GCATTACGAG CTCAGCTTCC TGCTGCGCTT AATATCCAAG TGACAACGGG TAACGATGAG
CTTCTGGCGT TAGTGACCTC ATCAAAGGTC GATACCGTTA TGGCGGCCAT TGTTGGCGCT
GCTGGGTTAG TTCCGACGCT TGCTGCCGTT AATGCGGGCA AACGAGTATT GCTAGCCAAT
AAAGAAGCCT TAGTTATGTC GGGTGAGTTG TTTATCGAGG CGACTAAGCG TTCAGGCGCA
ACTTTACTGC CTGTAGACAG CGAACATAAT GCGATTTTTC AATGTTTACC CCAAGAGGTA
CAGGCTAATC TTGGTCGTTG TGATTTAGCC GCATCCGGTA TTTCCCATAT TCTGCTAACG
GGTTCTGGTG GACCATTTTT ACGTTCAGAT TTAGCAACAC TTGCGGCCAT GACACCCGCA
CAGGCCTGTA AACATCCTAA TTGGTCTATG GGACCTAAAA TCTCTGTCGA TTCGGCGACT
ATGATGAATA AGGGATTAGA GTTCATTGAG GCGCGCTGGT TGTTTAATAC GCAAGCTAAC
CAACTTAAAG TGGTTGTTCA TCCGCAGAGT GTTATCCATT CAATGGTGCA ATATATTGAT
GGCTCTGTTA TTGCACAAAT GGGAAACCCT GACATGCGGA CACCGATTGC CCATTGCATG
GCCTATCCAC AAAGAATTCA CTCTGGTGTT GAACCTTTAG ATTTTTTCAA AGTCGGACAG
TTAAGCTTTT ATGAACCTGA TTTTGAGCGT TTTCCCTGTT TGGCGCTGGC TATGGCAGCC
TGTGCCCAAG GCCAAGAGGC GACAACGGTA CTCAATGCGG CGAATGAGAT CGCGGTTGAG
GCTTTTTTAC AAGGACAAAT AGGCTTTACG CAAATTGCTA AAGTGAATGA AACTTGCTTA
GCATTCGTCC CGAGTGGAAC TATGACCAGC ATTGAAGATA TTATCGCGTT AGATACGCAA
AGTCGCATTT ATGCGCGGGA AACTTTAGCT AAGATCGCTT AA
 
Protein sequence
MVILGATGSI GASTLSVISA NPLAYCVYGL VANASVDKML ALCITHQPKV AHMVDAVAAK 
ALRAQLPAAL NIQVTTGNDE LLALVTSSKV DTVMAAIVGA AGLVPTLAAV NAGKRVLLAN
KEALVMSGEL FIEATKRSGA TLLPVDSEHN AIFQCLPQEV QANLGRCDLA ASGISHILLT
GSGGPFLRSD LATLAAMTPA QACKHPNWSM GPKISVDSAT MMNKGLEFIE ARWLFNTQAN
QLKVVVHPQS VIHSMVQYID GSVIAQMGNP DMRTPIAHCM AYPQRIHSGV EPLDFFKVGQ
LSFYEPDFER FPCLALAMAA CAQGQEATTV LNAANEIAVE AFLQGQIGFT QIAKVNETCL
AFVPSGTMTS IEDIIALDTQ SRIYARETLA KIA