Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1345 |
Symbol | dapD |
ID | 5080972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 1524766 |
End bp | 1525590 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640498477 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001182872 |
Protein GI | 146292448 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.27962 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGGCTT TACGCCAACG TATTGAGGCG GCTTTTGAAG CGCGCGCCGA CATCACACCA AGTACAGTCG ACGCCAATGT GCGTAGCGAT GTGCAACATG TCATCAATAT GCTCGACAAA GGTGAAGTCC GTGTCGCCGA GAAAATCGAC GGCCAATGGC ATGTGCACCA ATGGCTGAAA AAGGCAGTAT TACTGTCCTT CCGTATTTTC GATAATGCGG TTATCGATGG CGCAGAAACC AAATACTTCG ACAAAGTGCC GTTAAAATTT GCCGAGTACG ATGAAGCCCG CTTTAAAGCG GAAGCCATTC GTGTGGTGCC TTCGGCGACA GTACGTAAAG GCTCATTTAT CGGTAAAAAC ACAGTGTTGA TGCCATCCTA TGTGAACTTA GGCGCCTATG TTGATGAAGG CACTATGGTT GACACTTGGG CCACTGTGGG TTCATGTGCA CAAATCGGTA AAAACGTGCA TTTATCCGGT GGAGTAGGCA TTGGTGGGGT ACTTGAGCCA TTGCAAGCTG GGCCGACCAT CATTGAAGAT AACTGCTTTA TCGGCGCGCG CTCTGAGATT GTTGAAGGCG TAGTAGTTGA AGAAGGCTCA GTGATTTCTA TGGGCGTGTA TATCGGCCAA AGCACTCGAA TTTACGATCG CGAAACTGGC GAAGTGCATT ATGGCCGTGT ACCTGCGGGC TCTGTGGTTG TCTCTGGCAA TCTACCCTCA GCCTGTGGCA AGTACAGCCT GTATGCTGCG ATTATCGTTA AGAAAGTGGA TGCAAAAACC CGCGGAAAAG TGGGTATCAA CGAGTTATTA CGCATAGTGG ATTAG
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Protein sequence | MEALRQRIEA AFEARADITP STVDANVRSD VQHVINMLDK GEVRVAEKID GQWHVHQWLK KAVLLSFRIF DNAVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS ACGKYSLYAA IIVKKVDAKT RGKVGINELL RIVD
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