| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1295 |
|---|
| Symbol | |
|---|
| ID | 5081022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1459885 |
|---|
| End bp | 1460835 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640498427 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001182822 |
|---|
| Protein GI | 146292398 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000017597 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACG TTTTTTGTAA AACTCTACTC GCTTCTGCGC TAGCTTCTAC AACTCTGGCT
TCAGCTTATG CCGCTGAGCC GCTGACTGTT TATGGTAAGT TGAATGTCAC TGCTCAATCG
AATGATGAGC AAGGTGATGC TACAACAACT ATTCAAAGTA ATGCTTCTCG TTTTGGTGTG
AAGGGTGATT TCGAACTGTC TAGCTCGTTA CAAGCCTTCT ATACTATTGA ATATGAAGTT
GATACTGGCG CTGAGACTAG CAACAACTTC ACAGCCCGTA ATCAATTCGT CGGCCTGAAA
GGCTCCTTTG GTTCGTTCTC TGTGGGTCGT AACGACACCC TGCTGAAAAC CTCTCAAGGT
GGCGTTGACC AATTCAACGA TTTATATGAA ACTGGCGACA TTAAAGTCCT GTTCAAAGGC
GAAAACCGTT TAAGCCAAAC GGCAACTTAT TTAACACCTT CATTTGGTGG TTTCGTCTTC
GGCGCAACCT ATGTGGCGGA AGGCGATGCC AATCAACAAG GTCAAGACGG CTTCAGCTTA
GCGGCCATGT ACGGTGACGC TAAACTGAAA GAATCAGCTT TCTATGCGGC TATCGCTTAC
GATTCAGATG TTAAAGGTTA TGAAATTATT CGTGCTACGG TACAAGGTAA AATCGCTGGT
TTCACCTTAG GTGGTATGTA CCAGCAGCAG GAAGAGACCT ATAAAGACGA ACTGCCGGTG
ACGACTGATA GCGTTAACGG TTACCTGTTC AGTGCGGCTT ATGATATCAA GGCAGTCACT
TTGAAAGCAC AATTCCAAGA TATGGAAGAC AAAGGTGATT CATGGTCAGT GGGTGCCGAT
TACAGCTTAG GTAAGCCAAC GAAATTATTA GCTTTCTACA CTAATCGTTC ATTCGAAGCT
TCTTCTGATG ATGACAAATA CATTGGTGTT GGTTTAGAAC ACAAATTCTA A
|
|---|
| Protein sequence | MMNVFCKTLL ASALASTTLA SAYAAEPLTV YGKLNVTAQS NDEQGDATTT IQSNASRFGV
KGDFELSSSL QAFYTIEYEV DTGAETSNNF TARNQFVGLK GSFGSFSVGR NDTLLKTSQG
GVDQFNDLYE TGDIKVLFKG ENRLSQTATY LTPSFGGFVF GATYVAEGDA NQQGQDGFSL
AAMYGDAKLK ESAFYAAIAY DSDVKGYEII RATVQGKIAG FTLGGMYQQQ EETYKDELPV
TTDSVNGYLF SAAYDIKAVT LKAQFQDMED KGDSWSVGAD YSLGKPTKLL AFYTNRSFEA
SSDDDKYIGV GLEHKF
|
|---|
| |