Gene Sputcn32_1286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1286 
Symbol 
ID5081013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp1445822 
End bp1446832 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content46% 
IMG OID640498418 
Productisocitrate dehydrogenase 
Protein accessionYP_001182813 
Protein GI146292389 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.0000000741785 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAAA GAACGATAAC CGTAATTCCA GGTGATGGAA TTGGCCCAAG TATTATTGAT 
TCAGCCTTAA AAATTCTTGA TAAAGCAGGT TGTGATTTTG AATATGAATT TGCCGATGCT 
GGTTTAACAG CACTCGAAAA ACAAGGCGAG TTACTTCCAC AGCGTACCTT AGAACTTATC 
GAAAAAAATC GCATCACACT TAAAGGTCCA CTCACAACAC CAGTAGGTGA AGGCTTTACT 
TCTATCAACG TGACATTACG TAAAAAATTC GGCCTGTACG CAAACGTGCG CCCAGTATTG 
TCCTTCAAGG GAACCCAAGC CCGTTACGAA AACATTGATA TCATCACAGT ACGTGAAAAC 
ACCGAAGGTA TGTATTCTGG CCACGGTCAA AAAGTGTCAG ACGATGGTTT AACCGCTGAA 
GCCACCAGTA TTGTGACTCG CCAAGGCGCA GAGCAAATCG CCACTTTCGC CTACGAACTG 
GCCCGTAAAG AAAACCGTAA AAAAGTCACT ATCGTGCACA AGGCAAACAT TATGAAGTCA 
ACTTCAGGCC TGTTCCTGAA AGTGGCCCGT GAAGTGAGCC TACGCTACCC AGACATAAAA 
ACCGAAGAAA TGATCGTCGA TGCAACCTGC ATGAAGTTAG TCATGAACCC AGAGAACTTC 
GATGTGATCG TGACCACCAA CCTATTCGGT GACATTTTAT CTGACCTGTG TGCTGGCTTA 
GTCGGTGGTT TAGGTATGGC ACCGGGCGCA AACATTGGCC GTGATGCAGC GATTTTCGAA 
GCGGTTCATG GTAGTGCACC CGATATCGCC GGTAAAAACC TCGCCAATCC AACCTCCGTC 
ATTTTGGCCT CGATTCAAAT GCTGGAATAT TTAGGCATGG CTGATAAAGC GGAACAAATC 
CGTAAAGCAG TATCTGCTGT CATCGAAGAA GGTGACCGTA CGACTCGCGA TTTAGGCGGC 
ACCCACGGCA CCACAGACTT CACTCAAGCG GTACTCGATC GCCTAAGTTA A
 
Protein sequence
MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKQGE LLPQRTLELI 
EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN 
TEGMYSGHGQ KVSDDGLTAE ATSIVTRQGA EQIATFAYEL ARKENRKKVT IVHKANIMKS 
TSGLFLKVAR EVSLRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL 
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKAEQI 
RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRLS