| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1275 |
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| Symbol | |
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| ID | 5081002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 1435280 |
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| End bp | 1437148 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640498407 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001182802 |
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| Protein GI | 146292378 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000628386 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTGG ACATTTCTCA GTTTCCTGTG TTGGCACAAG CCAATACCCC TAATGAACTC
CGCCAACTTC CTCAGGCCCT TTTACCGCAA GTGGCCGATG AATTAAGGGA GTTTCTACTT
AAGTCTGTTG GCATGTCCAG CGGACATTTC GCCTCTGGGC TTGGCACGGT AGAGCTTACG
GTTGCCTTGC ACTATGTCTA CAACACCCCA TTTGATCGAT TAATTTGGGA TGTTGGGCAT
CAGGCTTATC CCCATAAAAT CCTGACTGGT CGTCGGGATA AAATGCACAC TATTAGGCAA
AAGAATGGTT TACATCCTTT TCCTTGGCGT GAAGAAAGTG AATACGACAC TTTTAGTGTC
GGTCACTCAG GTACCTCAAT CAGTGCTGCC CTTGCCATGG CCGTTGCCGC AGAAAAAGAA
CAGGCTGGGC GTAAAGTTGT TGCCGTGATC GGCGATGGCG CTATGACTGG CGGCATGGTG
TTTGAAGCCA TGAACCACGC GGGCGACTTG CACAATGACA TGCTCGTGGT ACTGAACGAC
AACGAAATGT CGATTTCAGA AAATGTCGGT GCCCTCAATA ATCACTTAGC ACAACTCATG
TCTGGCCGTT TCTATACCAC ACTACGTGAA GGCGGTAAGA AAGTGCTCAA GGGTATGCCT
GTCATAAAAG AAATGGCGAA ACGGACTGAA GAACATCTTA AAGGCATGGT TGTTCCGGGC
ACTTTATTTG AAGAGTTAGG TTTTAACTAC ATAGGTCCAA TTGATGGCCA TGATGTAGAC
GCATTGGTTG AAACTATGCG TAATATGCGT AACCTCAAAG GCCCACAGGT ACTTCACATC
ATGACCAAAA AAGGTCGCGG TTACGAACCT GCGGAAAAAG ATCCTATTGG CTGGCACGCA
GTACCTAAAT TCGATCCAAC ACAATTTAAA AAACCCAGTA CAACCCCTGG TTTACCAACC
TTTTCACAGG TATTTGGTAA ATGGTTATGT GATATTGCCG AACAAGATGA CAAAGTATTA
GGCATTACGC CCGCCATGCG TGAAGGCTCG GGGATGGTAG AGTTTTCCCA GCGATTCCCT
AAGCAATATT TTGATGCAGC CATTGCCGAG CAACATGCAG TCACCTTAGG CGCTGGTTTT
GCCTGTGAAG GCTATAAACC TGTTGTAGCA ATCTATTCAA CCTTCCTGCA ACGTGGCTAT
GATCAGCTGA TCCACGATGT TGCTCTGCAA CGTTTACCCG TGTTATTTGC CATTGATCGT
GGCGGTATCG TCGGTGCCGA TGGTCCAACC CACCAAGGGG CATTCGATTT AAGCTTTATG
CGCTGCATCC CCAATATGGT GATTATGGCG CCGTCGGACG AAAACGAATG TCGCCAAATG
CTCTATACCG GCTACTGTTA CAATGCAGGC CCGAGTGCGG TGCGTTATCC AAGAGGCAGT
GCAACGGGGG CTACTCAAGT GGAAGCCATG ACAGCACTTC CTATTGGTAA AGGTGTCATA
AAACGTGTAG GTAAGCGTAT TGCTCTGTTA AACTTTGGTA CAACACTCGC CTCAGCTTTA
ACTGCGGCCG ATAACTTAGA TGCCACGGTT GTCGATATGC GCTTTGTCAA ACCGCTCGAT
GCCGAGCTAG TGACGGAAAT GGCGCAGACC CACGATATCC TAGTCACCGT AGAAGAAAAT
GCCATTATGG GCGGCGCGGG TTCTGGAGTA CTTGAATTGC TCCAAAAACT CAAAATGCCA
AAACCTGTGC TGCAAATCGG TCTACCCGAT GAGTTTATTA AGCACGGTTC ACCAGAGGAA
GTCACCCATG ACTTGCAACT GGATGCTGAA GGTATTTTGG CCCAAATAAA TGCTTATTTA
GCACAGTAG
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| Protein sequence | MSLDISQFPV LAQANTPNEL RQLPQALLPQ VADELREFLL KSVGMSSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDKMHTIRQ KNGLHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND
NEMSISENVG ALNNHLAQLM SGRFYTTLRE GGKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETMRNMR NLKGPQVLHI MTKKGRGYEP AEKDPIGWHA
VPKFDPTQFK KPSTTPGLPT FSQVFGKWLC DIAEQDDKVL GITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLGAGF ACEGYKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYNAG PSAVRYPRGS
ATGATQVEAM TALPIGKGVI KRVGKRIALL NFGTTLASAL TAADNLDATV VDMRFVKPLD
AELVTEMAQT HDILVTVEEN AIMGGAGSGV LELLQKLKMP KPVLQIGLPD EFIKHGSPEE
VTHDLQLDAE GILAQINAYL AQ
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