| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1253 |
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| Symbol | |
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| ID | 5080980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 1405242 |
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| End bp | 1408298 |
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| Gene Length | 3057 bp |
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| Protein Length | 1018 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640498385 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001182780 |
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| Protein GI | 146292356 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAACA GCATTTTTTT TCCGTTAGTA CAAAATGCGG CATTGTTACT GGCATTAGTT
TTTTTGTATG ACGCGATCCC TAAAAAACAT CAGCGGCAAT ATTTTCTGCT GTGGCGTGTC
ATTATTGGGT TTCTTATAGG TGGTATTGGT ATCACTATTA TGAGTACCCC TTGGATGTAT
CAACCCGGCA TTATCTTTGA CACTCGTTCC GTTCTCCTGT GTATTTCAGG TCTTTTCTTT
GGTGGTTTAC CGACATTAAT TGCAGTTGCG CTGACTGGAT TTTACCGTCT TAGTATCGGT
GGTGATGCCA TGTGGATTGG TGTTGCCGTG ATAGTGTCAT CTGGTTTAAT TGGAGTGATA
TGGCGCCAAT ATCGTAAGTC TTATCTTGCT AATATTTCGG CGAAGGAAAT GCTTTGCTTT
GCCTATACAG TGCATATCGT CATGTTGTTG TGGTTTTTTA CACTACCGCT GCCTGTTGCA
TTGCCCTTAC TTGCGAAACT CAGTTTGCCT GTACTGACGG TTTATCCCCT TGCCACTTGG
CTGTTGAGCC GCTTGTTGTC CAGACGCTTT GAGCTTGAGC GTGATGAACA AATTCGCCTT
CAGGATGACT TCCTATTTCG TAGTCAATTT ACCGTTGGCA ATATTGGTAT TGCGATAACG
GGTATCGATC AAAAATGGAT GAAAGTGAAT CCACATTTAT GTCAGATGCT CAAATACACT
GAGAATGAAC TGCTAAATAT GACATGGAAG CAGCTCACTC ACCCTGATGA TATTGAAGCT
GATATCGTTA AATTTGAGCT AATGCTAGCG GGTAAAATTG ATAATTATGA AATGGATAAA
CGCTTTATCG CTAAGGATGG CTCAATCGTT TATACCCATA TGACGGTCGC TTGTAAACGC
GCCAATAATA GGGTGCTCTT AGTGATTGCG GGCTACTTGG ATGTGACTGC ACAAACTTTG
GCCGATAGAG AAGTGCTTGC CAGTCGCGAG CAACTTGAAC TGGTGTTAAG CAGTAGCGAT
CTTGGGGTAT GGGATTGGGA TATTCGCAAT GACCGTATCG AACGCAACGC CCGTAGTGCT
GATATTCTGG GCTGTGATAT TGATATGCTT AATGCTAATA GCCGCCAATG GATGGATGCG
ATTGTTGCCG AAGATAGGCC TAAAGTGCTG CATTCCATAG AGGCGCATAT CCGCGGAGAA
ACGCCACAGC ATAAGATGGA ATACCGCTTA AATACGCTCA ATCGTCAGGT TCGTTGGATC
CTTGATACCG GTAAAGTTGT GAGTCGAGAT GCCAACAACA ATGCACTGAG GATGTGTGGA
ACTTACACTG ATATCACTGA GGCTAAACTG ATTGAAGAAT CATTAAAGCT CTCAGCTCTG
GTGTATGACA ATAGTTCCGA GGCCATGAGT GTGCTTGATG AAAAGGGCGT AATCATCACA
GTGAATGCCG CTTTTAGTGA TATCACAGGC TACAAGGCTA AAGAGGTCTG TGGTCAGCAT
ATTCGTCTCT TGTATTGCGA TATTAATGGC CGCGATTTTT ATGACAAGAT GAATAATGCC
ATTAATCAAA AAGGCCAGTG GCAAGGTGAG ATGCTACAGC GGCGTAAAAA TGGCGAAGAA
TATGTTATTT GGTTAACCAT CAATACCATC AAAGATAAAG AGGGCATGCC CTATCGCCGA
GTCGCCTTAT TTTCTGATAT TACCGATAAA AAGCAAAACG AACATTTGAT ATGGAAACAG
GCAAACTACG ATACATTAAC GGGCTTACCT AATCGCCGAA TGTTACTGGA ATACCTCGGG
GCAGAGATTA AAAATGCAGA CCGAAATCAA GATCATTTTG CATTATTATT TCTAGACTTA
GATTACTTTA AAGAAGTGAA CGATACCCTA GGGCATGAAA TGGGGGATCT ACTGCTGATT
GAAACTGCTA GCCGTTTAAA ATCCTGTGTG CGTGATGCTG ATGTCGTGGC CCGTCTTGGG
GGGGATGAGT TCACTGTTGT ACTCAGTACT ATGGCGGATC ATAAGGGCAT TGAACGAGTG
GCTGAGCATA TTCTCAGACG TATTGCTGAG CCTTATCTTC TGGGGGAGGA AACGGCTTAT
ATCACTGCAA GTATCGGTAT TACGCTCTAT CCAGATGATG CTACAAGTAT TGAAGGTTTG
CTTAAACATG CGGACCAAGC CATGTATGCC GCGAAGGATC AAGGACGTAA TCGATTTAAC
TATTTCACGC CGTCGATGCA GGAATATGCT AAATACCGGA TGCGACTTAT TCAGGATTTA
CGTCAAGCGG TGAGCAATAA GGAATTTGAA CTCCATTATC AACCAATTGT TTCGCTCACA
ACGGGAGAGG TGGCTAAAGC GGAGGCATTA ATCCGTTGGA CCCATGCTGA ACGCGGTAAT
GTATCGCCCG GTGAATTTAT TTCCGTTGCC GAAGACACGG GCTTGATCGT TGAAATTGGT
AACTGGGTAT TTGAGCAAGC TGCACGGCAA AGTGCAGCAT GGCGTGATGA ATTAGGTGTT
GATATTCAAA TCAGTGTGAA TAAATCACCC ATCCAATTTC GCGATGAAGG TGCATTATTA
CACAACTGGT TGGAGCTTCT TCAGGATTTA AATATTACTG GGGCAGGGGT CTGTGTCGAA
ATTACTGAAG GTTTATTGTT GGATGCGAGT ATGGGGGTCA CTGAAAAACT GCTGGCTTAC
CGTGATGCAG GGGTTCAAGT CTCGTTAGAT GATTTTGGCA CAGGTTACTC ATCGCTCGCT
TATTTAAAAA AGTTTGATAT TGATTACCTT AAGATTGATC AATCCTTTAC TCGGCATATA
GATACAGACA CCAATGATCA GATACTGTGT GAGGCCATTA TTGTTATGGC CCATAAATTG
GGGATGAAAG TCATTGCTGA AGGGGTTGAA ACCGAGGCAC AGCGCCAAGT GCTAGTCTCA
GCGGGGTGTG ATTATGGCCA AGGCTATTTA TTTTCTAAAC CCATTGCCGC GATTGATTTT
GCACAAAAGT ATTTAGCCAC CCCTAAAAAT CTATCTTCTG AGTTGGCGCC AGCGTAA
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| Protein sequence | MDNSIFFPLV QNAALLLALV FLYDAIPKKH QRQYFLLWRV IIGFLIGGIG ITIMSTPWMY
QPGIIFDTRS VLLCISGLFF GGLPTLIAVA LTGFYRLSIG GDAMWIGVAV IVSSGLIGVI
WRQYRKSYLA NISAKEMLCF AYTVHIVMLL WFFTLPLPVA LPLLAKLSLP VLTVYPLATW
LLSRLLSRRF ELERDEQIRL QDDFLFRSQF TVGNIGIAIT GIDQKWMKVN PHLCQMLKYT
ENELLNMTWK QLTHPDDIEA DIVKFELMLA GKIDNYEMDK RFIAKDGSIV YTHMTVACKR
ANNRVLLVIA GYLDVTAQTL ADREVLASRE QLELVLSSSD LGVWDWDIRN DRIERNARSA
DILGCDIDML NANSRQWMDA IVAEDRPKVL HSIEAHIRGE TPQHKMEYRL NTLNRQVRWI
LDTGKVVSRD ANNNALRMCG TYTDITEAKL IEESLKLSAL VYDNSSEAMS VLDEKGVIIT
VNAAFSDITG YKAKEVCGQH IRLLYCDING RDFYDKMNNA INQKGQWQGE MLQRRKNGEE
YVIWLTINTI KDKEGMPYRR VALFSDITDK KQNEHLIWKQ ANYDTLTGLP NRRMLLEYLG
AEIKNADRNQ DHFALLFLDL DYFKEVNDTL GHEMGDLLLI ETASRLKSCV RDADVVARLG
GDEFTVVLST MADHKGIERV AEHILRRIAE PYLLGEETAY ITASIGITLY PDDATSIEGL
LKHADQAMYA AKDQGRNRFN YFTPSMQEYA KYRMRLIQDL RQAVSNKEFE LHYQPIVSLT
TGEVAKAEAL IRWTHAERGN VSPGEFISVA EDTGLIVEIG NWVFEQAARQ SAAWRDELGV
DIQISVNKSP IQFRDEGALL HNWLELLQDL NITGAGVCVE ITEGLLLDAS MGVTEKLLAY
RDAGVQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRHI DTDTNDQILC EAIIVMAHKL
GMKVIAEGVE TEAQRQVLVS AGCDYGQGYL FSKPIAAIDF AQKYLATPKN LSSELAPA
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