Gene Sputcn32_1159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1159 
Symbolrnc 
ID5081569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand+ 
Start bp1301806 
End bp1302486 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content44% 
IMG OID640498290 
Productribonuclease III 
Protein accessionYP_001182686 
Protein GI146292262 
COG category[K] Transcription 
COG ID[COG0571] dsRNA-specific ribonuclease 
TIGRFAM ID[TIGR02191] ribonuclease III, bacterial 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0446334 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACCGA TTAAAAATTT GCCTCGTTTG TGTCGTACTT TGGGCTATGA GTTCACTCAA 
ATTGAACTCT TAACTCAAGC TTTGACCCAT AGAAGTGCGG CAAATAAGCA CAATGAACGT 
TTAGAGTTTT TAGGTGATTC GATTTTATCT ATCGTAATAT CCGACGCACT TTATCATCAG 
TTTCCTAAGG CGACTGAGGG CGATTTAAGC CGCATGCGTG CAACTTTAGT ACGTGGTGAT 
ACTTTAACGA TCATTGCCCA GGAGTTTAAA CTCGGCGATT ATTTATATCT CGGCCCCGGT 
GAATTAAAAA GCGGTGGATT TCGCCGTGAA TCGATTCTTG CCGATGCGGT AGAGGCCATT 
ATTGGTGCAA TTTATCTCGA TTCTGATCTC GAAGTGTGCC GAAAATTACT GCTAACTTGG 
TATGCCGAGC GTTTAGCTGA GATTCAACCG GGTGTGAGCC AAAAGGATGC CAAAACCTTA 
CTGCAAGAAT ATTTACAAGG GTTGAAAAAG CCCTTGCCTG ACTATCAAGT TATCAACATA 
GAAGGCGATG CTCACGATCA GACATTTACC GTTGAGTGTC GTATTGAAGA CTTGAGTCAA 
AGCGTGATTG GTGTGGCGAG TTCACGTCGC AAAGCCGAGC AAATCGCGGC CGCTCAAGTA 
TTGGAGTTAC TAAAGAAATG A
 
Protein sequence
MEPIKNLPRL CRTLGYEFTQ IELLTQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ 
FPKATEGDLS RMRATLVRGD TLTIIAQEFK LGDYLYLGPG ELKSGGFRRE SILADAVEAI 
IGAIYLDSDL EVCRKLLLTW YAERLAEIQP GVSQKDAKTL LQEYLQGLKK PLPDYQVINI 
EGDAHDQTFT VECRIEDLSQ SVIGVASSRR KAEQIAAAQV LELLKK