| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1153 |
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| Symbol | |
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| ID | 5081663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 1296103 |
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| End bp | 1296681 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640498284 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001182680 |
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| Protein GI | 146292256 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000609864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGGAC AAATAAGTGA TCAACAATTA GTTGAGCGCG TACAACGGGG AGATAAAAAC
GCTTTTAACC TGTTAGTGCT TAAATATCAA AGTAAAGTTA TCAGCTTGAT TTCGCGATAC
GTACGTAATC AAGCAGACGT TGCCGATGTA GCACAGGAAG CGTTTATCAA AGCCTATAGA
GCTTTGCCAA ACTTTCGTGG AGAAAGTGCG TTTTATACCT GGTTGTACCG TATTGCAGTA
AACACTGCAA AAAATTATCT CGTATCACAG GGGCGTAGAG CGCCTGCAAA TGACGTTGAT
GCAGAAGATG CCGAATATTA TGAAGGTAGT GATGCACTGA AGGAGTTCGC CTCCCCAGAA
CGGCTAATGT TATCGGATGA AATCAAAAAA GTGATCTTCG ATACCTTAGA AACACTGCCA
GAAGAATTGC GAATGGCTAT CTCGTTGCGT GAACTCGATG GTATGAGTTA CGAAGATATT
GCCATAGTCA TGGATTGCCC CGTTGGGACC GTAAGATCGC GTATCTTCCG TGCCCGAGAG
GCTATCGATA AAAAACTCCA GCCTCTACTG GAAGAGTAA
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| Protein sequence | MSGQISDQQL VERVQRGDKN AFNLLVLKYQ SKVISLISRY VRNQADVADV AQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NTAKNYLVSQ GRRAPANDVD AEDAEYYEGS DALKEFASPE
RLMLSDEIKK VIFDTLETLP EELRMAISLR ELDGMSYEDI AIVMDCPVGT VRSRIFRARE
AIDKKLQPLL EE
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