| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1057 |
|---|
| Symbol | |
|---|
| ID | 5081665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1182155 |
|---|
| End bp | 1183714 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640498187 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_001182584 |
|---|
| Protein GI | 146292160 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0994487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAGAA AATTATTAAG ATCTGGTATG ATAGTCAGTG CAATGACATT GATATCCCGT
GTTTTAGGTT TGATAAGAGA TGTTGTAGTT GCAAACTTGA TGGGAGCCGG AACCAGTGCG
GATGTTTTTT TCTTCGCCAA TAAAATTCCA AATTTTTTAC GCCGCTTATT TGCAGAAGGT
GCATTTGCAC AAGCATTTGT TCCTGTTTTA ACTGAATATC AGGAAAAGCA TTCATCGGAG
GAAACCCGTG AGTTATTGAG TAAGGTAGCG GGAACACTTG GTTTGTTAGT GACAATAGTC
ACCTTAGTTG GAGTAATAGC GTCACCTGTA TTATCGGCAC TATTTGGTGG CGGTTGGTTC
ATCGCATGGC TTAACAATGA GCCTGATGGT GCGAAATTTG AACTTGCTAC CGTCGTGCTT
AAAATTACTT TCCCTTATTT GTGGTTTATC ACTTTTACTG CCTTAGCTGG CTCAATTTTA
AACACCCGAG GACGTTTTGC GGTATCGGCT TTTACGCCTG TATTTCTTAA CGTGGCGATT
ATTGCTGCGG CTATTTTCTA TGCACCAACA TCGACTCAAC CTGAAATCAC TCTCGCTTGG
GGGGTGTTTT GTGGTGGATT GATTCAGTTT TTATTTCAAA TTCCCTTTCT TTTGCGAGAA
AAGGCGCTTG TTAAACCTTC TTGGGGCTGG AATCACCCTG GTGTCGTTAA GATTAGAACG
CTAATGATCC CTGCATTATT TGGTGTGTCT GTTTCACAAA TTAACCTTTT ATTTGATACC
TTTATCGCTA GTTTTTTGAT GACAGGCTCA ATTAGTTGGC TTTATTACTC TGATCGATTG
TTGGAGTTTC CGCTTGGGCT TTTTGGGATT GCGATTGGAA CGGTTATTTT ACCTGCACTT
TCACGAAACC ATGTTAATGC AGAAGGCGCT GGTTTTGGTA AAACCATGGA CTGGGGAATA
AAAGCGATTT TATTGCTTGG GTTGCCTGCA ATGATGGGAT TAATCGTATT AGCTAAGCCC
ATGTTGATGG TGCTGTTTAT GCGCGGCGCT TTCTCTGTTC ACGATGTAGA AATGGCTTCC
TATAGTTTGA TGGCTTACGG TAGTGGTTTA CTTAGCTTTA TGCTGATTAA AGTGCTGGCA
CCAGGATATT ACTCCCGCCA AGATACTAAG ACGCCCGTAC GATATGGCAT TATTGCTATG
ATTACTAACA TGGGGTTTAA CCTCTTGTTT GCGGTACCTT TTGGATATGT TGGATTGGCG
ATTGCGACCT CCATGTCAGC ATTGCTCAAC GCGACATTAC TATACCGAGG CTTGCATTTA
GCGGGGGTAT ATCGAGTTTC GAAGCCAACG ATGGTGTTTT TTGCTAAAGC CGTGGTCTCT
ACAGCCTTGA TGGTGGTAGT CTTATACTAC TTTTTGCCGT CACAATCCCA ATGGCTAGAA
TGGCACCTGA TTGAGCGTGG GAAGGCTTTG ATGGGCTTAA TTGCTTTGGG GGCTGTAACT
TATCTGCTTG GGTTACTTGT GTTTGGAATT CGTCCTTGGT CAATGAAACG GGGAGCATGA
|
|---|
| Protein sequence | MSRKLLRSGM IVSAMTLISR VLGLIRDVVV ANLMGAGTSA DVFFFANKIP NFLRRLFAEG
AFAQAFVPVL TEYQEKHSSE ETRELLSKVA GTLGLLVTIV TLVGVIASPV LSALFGGGWF
IAWLNNEPDG AKFELATVVL KITFPYLWFI TFTALAGSIL NTRGRFAVSA FTPVFLNVAI
IAAAIFYAPT STQPEITLAW GVFCGGLIQF LFQIPFLLRE KALVKPSWGW NHPGVVKIRT
LMIPALFGVS VSQINLLFDT FIASFLMTGS ISWLYYSDRL LEFPLGLFGI AIGTVILPAL
SRNHVNAEGA GFGKTMDWGI KAILLLGLPA MMGLIVLAKP MLMVLFMRGA FSVHDVEMAS
YSLMAYGSGL LSFMLIKVLA PGYYSRQDTK TPVRYGIIAM ITNMGFNLLF AVPFGYVGLA
IATSMSALLN ATLLYRGLHL AGVYRVSKPT MVFFAKAVVS TALMVVVLYY FLPSQSQWLE
WHLIERGKAL MGLIALGAVT YLLGLLVFGI RPWSMKRGA
|
|---|
| |