Gene Sputcn32_1050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1050 
Symbol 
ID5081752 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp1173183 
End bp1174283 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content44% 
IMG OID640498180 
ProductOmpA/MotB domain-containing protein 
Protein accessionYP_001182577 
Protein GI146292153 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0116313 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAGA ATACATTAAA AGTAGTTTTA CTTACGTCAA TGCTCCCACT TGCTGCCAGT 
GCATCTCAAG AACTCACGCC TTGGTATGTT GGTGCAGGTC TAGGCGTTAA TAACTATGAA 
CACATTGCAA CTCAAAACGG TGATGACAAC CCATACGCAT GGGATATATT TGCCGGCTAT 
ATGTTTAATG ACTACTTTGG TGCAGAAATC GGCTACCGTG ATCTAGGTAA CGCTGATTGG 
ACCACTTCAG GCATTAGCAA CGATGCTGAC GTAAAAGGCG CGACACTTGG TTTAGTTGGT 
CTTTGGCCAT TAGCTAACCG TTGGAGCCTA TCAGCTGAAG CTGGAGCAAT GTATTACACT 
CTTGAAAATA GCCAACGTGA TACTATTTCT GGTGCTCGTA GTTCATATAG CTCTGACGAC 
TTCGCCCCAT ACTTTGGTGC AGGTATCGGC TACAACTTCA CTGACAACTT GAAGTTACAA 
GCCAAATACC GTCGTTATGA AAACTTAGAT GACAAATACA ACATCGTTGA AGCAGATAGC 
AACTACTGGG GCCTAGAGCT TAGCTACCGT TTTGGCACTC CAGTTGCCGC CGCAGCACCA 
GTTGTAGCAG CCGTTGTTGC TGCACCTGTC GACTCAGACA ACGATGGTGT ATACGACGAT 
AAAGATCAAT GTCCAGCGAC ACCAGCAACT CATAAAGTTG ACTCTGTGGG CTGTACCATT 
TATGAAAATG TGAAAAACAA AGAAGACGTA GGTTCAATCC AGTTTGCTAA CGATTCTGCT 
GTAGTTAAAA ATGTATACTA CAAAGACATC GAAAGACTAG CTAACTACTT GAACAAGAAC 
CCTGAATTCA CAGTTGAAAT TGCTGGTCAT GCCTCAAACG TAGGTAAACC AGAATACAAC 
ATGGTTCTGT CTGACAAGCG TGCTGACGCT GTTGCCAATA TTCTTGTAGA AAAATTTGGT 
ATTAGCAGAA GTCGTGTAAC CTCCAACGGT TACGGTATTA CTCAGCCGTT AGTTGCTGGT 
GATTCGAAAG AAGCTCATGC TGCGAACCGT CGCATTGAAG CTATCGTTAC AACCACAACA 
AAACAACCTG TTCTGAAGTA A
 
Protein sequence
MMKNTLKVVL LTSMLPLAAS ASQELTPWYV GAGLGVNNYE HIATQNGDDN PYAWDIFAGY 
MFNDYFGAEI GYRDLGNADW TTSGISNDAD VKGATLGLVG LWPLANRWSL SAEAGAMYYT 
LENSQRDTIS GARSSYSSDD FAPYFGAGIG YNFTDNLKLQ AKYRRYENLD DKYNIVEADS 
NYWGLELSYR FGTPVAAAAP VVAAVVAAPV DSDNDGVYDD KDQCPATPAT HKVDSVGCTI 
YENVKNKEDV GSIQFANDSA VVKNVYYKDI ERLANYLNKN PEFTVEIAGH ASNVGKPEYN 
MVLSDKRADA VANILVEKFG ISRSRVTSNG YGITQPLVAG DSKEAHAANR RIEAIVTTTT 
KQPVLK