Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1010 |
Symbol | |
ID | 5081812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 1124766 |
End bp | 1125479 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640498135 |
Product | two component transcriptional regulator |
Protein accession | YP_001182538 |
Protein GI | 146292114 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000199702 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCAGCC CACAAGCATC CCACAGAGTG TTATTGGTTG AAGACGATGT CCGTCTGGCA AATTTAATCG TCGATTACTT AAAATCCCAC GGCATGCATG TCGAAGTGGA ACGCCGCGGC GATACTGTTT TAACGCGTTT AATCAACTAT AAGCCCGATA TCATACTGTT AGATATTATG CTGCCAGGCA TGGATGGCCT GAGCCTGTGC GAAAAATTAC CTGACTATTT TGCAGGTCCA ATACTGTTGA TGAGCGCGCT TGGTTCGACT GAAGATCAAA TCAAAGGATT AGAATTGGGC GCCGATGATT ATGTGGTCAA GCCCGTTGAT CCTGCGCTAT TAGTGGCAAG AATTCACAAC TTACTACGCC GTCAAAATCA ACCACCACAG GCCGAATCCC ATTGTTTAAC CTTTGGCAAA CTCAGTATCG ATCCGCATAC CCATGCCATT AGACTTGACG ATAAAGAAGT CGATTTAACC AGCCACGAAT TTGAGCTGCT ATGGTTGCTG GCCTCACAGG CGGGACAAGT GCTAAGTCGC CAGTACATAT ACCAGCTACT GCTCAATATT GACTTTGACG GTAAAGATCG AAAAATCGAT GTGCGGATCT CAAGACTTCG TAAAAAACTC AACGATAATA TTGAGACACC TTTTAGAATT AAAACCGTTT GGGGACAAGG TTATCTATTT GCCCCAGAAG CTTGGAATAA CTAA
|
Protein sequence | MTSPQASHRV LLVEDDVRLA NLIVDYLKSH GMHVEVERRG DTVLTRLINY KPDIILLDIM LPGMDGLSLC EKLPDYFAGP ILLMSALGST EDQIKGLELG ADDYVVKPVD PALLVARIHN LLRRQNQPPQ AESHCLTFGK LSIDPHTHAI RLDDKEVDLT SHEFELLWLL ASQAGQVLSR QYIYQLLLNI DFDGKDRKID VRISRLRKKL NDNIETPFRI KTVWGQGYLF APEAWNN
|
| |