Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0784 |
Symbol | |
ID | 5081994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 873652 |
End bp | 875340 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640497910 |
Product | malate dehydrogenase |
Protein accession | YP_001182313 |
Protein GI | 146291889 |
COG category | [C] Energy production and conversion |
COG ID | [COG0281] Malic enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.228066 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGATA ATAAACGCCC CCTCTATCTT CCGTTTGCAG GACCTGCCAT TCTTGAAGCC CCACTGATTA ACAAGGGCAG TGCATTTTCT GAAGAAGAGC GAATTTTCTT TAACCTCGAA GGCTTAGTCC CCTACGCCAT TGAAACGATT GAGGAGCAGG CTTCTCGCGC CTACGATCAA TTTAGAAGTT TCAATAACGA CTTAGACAAG CACATTTACC TACGGAATAT TCAAGACACA AACGAGACCT TATTTTATCG TTTAGTGCAA AATAACATCA GCGAGATGAT GCCCATCATC TATACGCCGA CAGTCGGTTT AGCTTGTGAG CGTTTTTCGA AAAACTATCG CCGCAACCGT GGTTTGTTTA TCTCCTATCC GAACAAAGAT AGGATCGATG ACATCCTCAA TAACTCGACT CGCCAAAAAG TTAAAATTAT CGTAGTCACT GATGGTGAAC GTATTTTAGG CCTTGGCGAT CAAGGTATTG GCGGCATGGG GATCCCTATC GGTAAGCTGT CACTCTACAC TAGCTGTGGC GGTATCAGTC CAGCTTATAC CCTGCCTATT ACCTTAGACG TAGGCACAGA TAATCCGCAG TTGTTAGAAG ATCCTATGTA TATGGGTTGG CGCCATCCGC GCATCGGTGG CGAAGAATAT GCCGAGTTTA TCGAAGCCTT TATGCAAGCC GTCCACGTGC GTTGGCCAGA TACTTTGATC CAGTTCGAAG ACTTTGCCCA AAAGAATGCC ATGCCGATCC TAGAGCGTTA TAAGGATCGC TATTGCTGCT TTAACGATGA TATTCAAGGC ACTGCTGCGG TTGCCGTTGG TTGCTTGCTC GCCGCGTGTA AGGCTGCGGG CACTGAATTA AATCAGCAAC GTATCGCCTT CCTCGGTGCT GGTAGCGCCG GTTGCGGTAT CGCCGAAGCT ATCGTGGCAC AAATGGTGTC AGAAGGGATC AGCGACGAGC AAGCTCGCAC CCAAGTGTGT ATGGTTGACC GTTGGGGCTT ATTGCTAGAT AACATGCCTA ACCTGTTGCC ATTCCAGCAG AAGTTGGCGC AGAAATGTGC CAATATTCAA AACTGGAACA ACTTCAGCGA CAATATTTCA CTGCTCGATG TGGTAAACAA CGCCAAGCCG ACCGTGCTGA TTGGGGTATC TGGCGTTCCG GGTCTCTTCA CCGAAGAAAT CATCCGTGCT ATGCACAGCC ATTGTGCTCG GCCGATTATT TTTCCTATGT CGAACCCCAC CAGCCGCGTA GAAGCGACAC CTAAAGACAT CTTGCATTGG ACTTCGGGCC AAGCATTAGT GGCGACAGGC AGCCCGTTCG AGCCAGTGGT TGTCGATGGT GAAACCTATG AAATTGCCCA GTGCAACAAC AGCTTTATCT TCCCCGGCAT TGGTTTAGGC GTATTAGCAT CAGGCGCACG TCATGTATCC GATGCCATGT TGATGGCGTC AAGCCGCGCA CTTGCCGAAT GTTCGCCACT GGCAATCGAT GGTACTGGCC CATTACTGCC TAAACTGGAA GATATCCATG CCGTGAGTAA GCACATTGCT TTCGCAGTAG GCAAAGTCGC GGTAGAACAA GGGTTAACGC TACCTATGAG CGATGAGATT TTGCAGCAGT CAATTGAAGG TAATTTCTGG AAACCAGAAT ACCGCCGCTA TAAACGTACC TCATTCTAA
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Protein sequence | MDDNKRPLYL PFAGPAILEA PLINKGSAFS EEERIFFNLE GLVPYAIETI EEQASRAYDQ FRSFNNDLDK HIYLRNIQDT NETLFYRLVQ NNISEMMPII YTPTVGLACE RFSKNYRRNR GLFISYPNKD RIDDILNNST RQKVKIIVVT DGERILGLGD QGIGGMGIPI GKLSLYTSCG GISPAYTLPI TLDVGTDNPQ LLEDPMYMGW RHPRIGGEEY AEFIEAFMQA VHVRWPDTLI QFEDFAQKNA MPILERYKDR YCCFNDDIQG TAAVAVGCLL AACKAAGTEL NQQRIAFLGA GSAGCGIAEA IVAQMVSEGI SDEQARTQVC MVDRWGLLLD NMPNLLPFQQ KLAQKCANIQ NWNNFSDNIS LLDVVNNAKP TVLIGVSGVP GLFTEEIIRA MHSHCARPII FPMSNPTSRV EATPKDILHW TSGQALVATG SPFEPVVVDG ETYEIAQCNN SFIFPGIGLG VLASGARHVS DAMLMASSRA LAECSPLAID GTGPLLPKLE DIHAVSKHIA FAVGKVAVEQ GLTLPMSDEI LQQSIEGNFW KPEYRRYKRT SF
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