| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0749 |
|---|
| Symbol | |
|---|
| ID | 5082057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 835532 |
|---|
| End bp | 837955 |
|---|
| Gene Length | 2424 bp |
|---|
| Protein Length | 807 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640497874 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_001182278 |
|---|
| Protein GI | 146291854 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000988982 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAG ACCCTCATTT TGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGC
CGTGAGTATA TTATCGAATA CTTACGTTCT CAAAAATCAC CCATCACTCG TGACAGCATC
GCCGCAGCGT TAAACATTCA CGAGGAAGAG CAACTAGAAG CCTTAAGGCG TCGCCTACGT
GCGATGGAAC GCGATGGCGA ACTGGTGTTC ACCCGCGGAC AAAGCTATGG CTTACCAGAG
AAGATGGACT TAATTTCCGG CATCGTTCTT GGGCATAGGG AAGGCTTTGG CTTTTTCAAG
CCCGATGAAG GCGGTGATGA CTTATTTATC TCCAACCGCG ATATGTTGAT GTACTTCCAC
GGTGATAAAG TACTGGCGCA AAAGGCAGGG TTAGATCGTC GAGGCCGCCG CGAAGCCCGT
ATTGTACGCC TTATTCAGCC TCGCAGTGCT GCAATTGTCG GTCGCTATCA TGTCGATAGC
GGTATGGCAT TTGTGATTGC CGATGATAAA CGCATTACCC AAGAAATTTT AGTCGCCAAT
GAAGACCGCA ATGGCGCCCG TCAAGGTGAT GTGGTTGTGG TTGAATTAAC GCGTCGCCCA
GGCCGTTTTG TTAAGGCTGC GGGTAAAGTG ACCGAAGTGC TTGGTAAGCA AATGGCGCCG
GGGATGGAAA TCGAAATCGC CCTGCGTAAC TATGACTTAC CCCATACTTG GTCACCCGTG
ATCGAGAAGA AACTGCGCCG TATTCCCGAT GAAGTGACCG AAGCCGATAA AGTAGGCCGT
GTGGATTTAC GTCATCTCCC CTTAGTGACT ATTGACGGGG AAGACGCCCG CGATTTTGAT
GATGCAGTGT ATGCCGAGAA AAAAGCAGGT GGCGGCTGGC GTTTATGGGT CGCAATCGCG
GATGTCAGTT ACTATGTACG CACCGATTCG GCATTAGATA CTGAAGCGCG TGCCCGTGGT
AATTCAGTGT ATTTCCCGTC GCAAGTTATC CCTATGTTGC CAGAGAAAAT CTCTAACGGC
TTATGTTCGC TTAATCCTCA CGTCGACCGT TTATGTATGG TCGCTGAGAT GACGGTATCT
GCAAAAGGTA AGTTATCGGG TTACAAATTT TATCCGGCTG TGATGTATTC CCATGCCCGT
TTCACTTATA CCCAAGTGGC AGAGATGTTA GAAGGCGGCC CGATTGCACC AGAGCACGAG
GCCTTATTCC CACATTTGCA GTGTTTACAA TCATTGTATT TAGCGCTCGA TGAGCAGCGA
GCCGAGCGCG GCGCGATTGC CTTTGAGACC ATGGAAACGC AGTTTATTTT TAATGAGCAG
CGCAAGATTG AAAAAATTGT GCCACGTGGC CGCAATCAAG CACATAAAAT CATTGAAGAA
TGTATGATTT TAGCCAACGT TTCGGCGGCT AAGTTTGTGA AGAAACACAA AGGCGAAGTC
TTGTATCGTG TACATGAAGC GCCATCAGAG CAAAAGCTAG CGAACTTTAA AGAGTTTTTG
GCCGAGCGTG GCTTGACTAT GACTGGCGGG CTTGAGCCAA CGCCGTCAGA TTATCAGAAC
GTGATGCTGC AAATTGCCGA CCGTCCCGAT GCTGAACTTA TCCAAGTGAT GTTGCTGCGT
TCTATGCGTC AAGCAATTTA TACACCTGAT AATGAAGGCC ACTTCGGTTT AGCCTTAGAA
GAATATGCGC ATTTTACCTC GCCCATTCGC CGCTATCCGG ATTTAGTGTT ACATCGTGTG
ATCCGTTATT TACTGGCGAA GGAAAGGGGC GAAGCCACTG AGAAGTGGAC GCAGGATGGT
GGCTACCACT ATCAACTCGA TGAACTCGAT CAATTAGGTG AAGAGTGTTC GACCACAGAA
CGTCGTGCCG ATGAAGCAAC TCGAGATGTC AGCGATTGGC TCAAGTGCGA GTTTATGCAA
GATCACGTCG GCGATACCTT CGAAGCTGTG ATTGCTTCAG TAACCAGTTT TGGTTTGTTT
GTGCGTTTAA ATGAGCTATT TATCGATGGC TTAGTGCATA TCTCAAGCCT AGGTAGCGAT
TACTACCAGT TTGATCCAAT GCGCCAACGT CTTATCGGCG AGCACACAGG CCAAGTCTAT
CAAGTGGGTG ATCCTGTGAC AGTTAAGGTC GCTGCAGTCA ACTTAGATGA CAGACAGATT
GATTTGATCA TGCTGGGTGA TGATAGCAAA GGTGGCAAGC GTAAAGTATC AGCTAGCCGT
GATAAACCTA TGACAGCCCG TGAGCGTGTT AATCGTGAAG GTGCTAAGCA AGGTAAAGCT
GGCAAAACCG CGGCATCTAG CGCCAAAGTT GGAACAGGCA AAGCCAAACC TAAGGCCAAA
GCGGGTGCTA AAGCCAAAAA AGCAACTGTA AAAGATCCGG CTAAAAAGCC AAAAGCCGCG
AAGCGGAGCA CGAGAAAGAA ATAA
|
|---|
| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIEYLRS QKSPITRDSI AAALNIHEEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLISGIVL GHREGFGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG LDRRGRREAR IVRLIQPRSA AIVGRYHVDS GMAFVIADDK RITQEILVAN
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSPV
IEKKLRRIPD EVTEADKVGR VDLRHLPLVT IDGEDARDFD DAVYAEKKAG GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTVS
AKGKLSGYKF YPAVMYSHAR FTYTQVAEML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET METQFIFNEQ RKIEKIVPRG RNQAHKIIEE CMILANVSAA KFVKKHKGEV
LYRVHEAPSE QKLANFKEFL AERGLTMTGG LEPTPSDYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKERG EATEKWTQDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTSFGLF
VRLNELFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLIMLGDDSK GGKRKVSASR DKPMTARERV NREGAKQGKA GKTAASSAKV GTGKAKPKAK
AGAKAKKATV KDPAKKPKAA KRSTRKK
|
|---|
| |