Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0748 |
Symbol | |
ID | 5082056 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 834836 |
End bp | 835492 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640497873 |
Product | Sel1 domain-containing protein |
Protein accession | YP_001182277 |
Protein GI | 146291853 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000706188 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGTAT TCACCCTATT GTCATTGAGA GTCGTTATGC TTCGTACTGT ATTAGTTGCG CTACTGCCTT TAGTCTCTTC AATGTGCTTT GCGCAAACAC TGGCAGTCGA TATTTACAGC CAAGATCAAT TGCTTGAATT GATCCGTAGC AATCAGTATT TAGCGAAAGT AAAGCGTGAT GATTGCCAAT TGGTCCAAGA TATTGAGGCC AGGGCTGAAG TTCTGAAGCA ACCTTTATAT CAATTTCTTT GGGGAGAAAT GCTGAACCAT GGGACTTGTG TAAAAGCAAA TCCTACTAAG GGAATGCGCT TGCTACGTGA TTCGGTTGAA CAAGGTAGCC CTGAAGCAAT GGTGAAACTT GCCGAGTATT ATCAAAGTGG TAAATTTGTC ATTCGCAATA AAGATCGAGC AGTTAACTAT TTGTTACCTG CAGCCGCAAG CGGCGATTTA CCCGCTCGTA TGATGTTAGT GCGTTTATAC GGTGAAGGTT ACGGTAGTCC AAGGGATTAC GAAATGGCCT ATCACTGGTT ATATAACGAT GTATTTGTAG ATGAGGCGAC GAAGAAAAAA GCCTTATCTT TACTGCAGGT GTTAGCAGCT AAAATGCCCC CCAGTGCAGT GGCGCGGGCC CAGCAAGAGC AGTTGCGAAC CCGTTAA
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Protein sequence | MQVFTLLSLR VVMLRTVLVA LLPLVSSMCF AQTLAVDIYS QDQLLELIRS NQYLAKVKRD DCQLVQDIEA RAEVLKQPLY QFLWGEMLNH GTCVKANPTK GMRLLRDSVE QGSPEAMVKL AEYYQSGKFV IRNKDRAVNY LLPAAASGDL PARMMLVRLY GEGYGSPRDY EMAYHWLYND VFVDEATKKK ALSLLQVLAA KMPPSAVARA QQEQLRTR
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