| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0562 |
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| Symbol | |
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| ID | 5080600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 611058 |
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| End bp | 612248 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640497689 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001182093 |
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| Protein GI | 146291669 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGTTA TCAACAAAAT GCTAAAAGAT CTTGATCAGC GCCAACAGGG ACATCAACTT
TCAAATATTG CCCAGCATCA AGTGCAATAT TTAGGTCGCA AGCATAGCGT TAACATCTGG
GTTTCAATCA GCCTAATGTC ATTGCTTATT GGCGGTGTTG GTGTTTATGG CTATCAATTA
ATCAGTCAAA TGCCTGTCGA GCCAGCACCT AAGTTTGCCG CCGCGAGTGA GACTGAAGTG
GCGATAATCC CAACAGTGCC AGAAATAAAC GCTGAAGCAG AGACAATCAC CTCAGAGGCC
GTGAATGTCA CCGAGCCTTT AGCCCTTAGC AAAAAGACAG TGGTCAAAGC ATCTAATGGT
TTGGTTAATA CAGAAATGCC CCTCGATGAG GGATCGCATC CAGTCGCCAA GCAGAATGCC
CAAATAGAAG CCACAGTGAC CGCTAATGCC CAATCTGAAC CACAGACAAT AGTCACAGAA
GAGGATGAAA TTGTTGAAGC GATTCAGGCC AGTGCGCCCG AACGTGAGTT CGTTAAGTCA
TCCGTAGATA CCCCCACAAT TGAGCCTGTT AAACCTGCGG GTAAAATGGC GGTGACAGAA
GTTAAGCTTA CGCCAAGCCA GCTCGCGCAA AAGCAGCTTA CTCTTGCAAC TGATGCCGAA
AAACAGGGAA AACTCGATAA GGCACTCGAA TATTATGAAA AGGCCCTCGG CTTTGACCCA
AGCTTACATA ATGTGCGTCA GCAGCTTGCG GCATTGCACT ATGGCCAAGG ACGGCTCAAT
AACGCCGAAC AAGTGTTGCA GCAAGCCGTA CTGTTATACC CTCAAGAATT TGAGTTTTAC
CTGTTATTAG CACGAGTTCA GCAGGAGCTT GGCGAAGTAG ATTTAGCATT AGCTAGCCTA
GCGCAAATCC CCGATAGCCA TGTTTTAGCA CGGCAAAAAT GGTTAGCGCA AACCGATTTA
GCCCAAAAAC AAGGGCAATT TACTTTAGCT GAACAGGCTT ATCGGCAGCT ATTGCAACAG
GAGCCGCAGC AAGGAAAATG GTGGATGGGC TTAGGGTATG CTTTAGATTC TCAGCAGCAA
TTTGCCAAGG CGAGTCAAGC CTATCGCACC GCATTAAGCC ATTCAGGGCT CTCGGCGCAG
GCAACGACTT TTATTGAACA ACGATTAAGC CAACTAGGAG ATAGCCAATG A
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| Protein sequence | MSVINKMLKD LDQRQQGHQL SNIAQHQVQY LGRKHSVNIW VSISLMSLLI GGVGVYGYQL
ISQMPVEPAP KFAAASETEV AIIPTVPEIN AEAETITSEA VNVTEPLALS KKTVVKASNG
LVNTEMPLDE GSHPVAKQNA QIEATVTANA QSEPQTIVTE EDEIVEAIQA SAPEREFVKS
SVDTPTIEPV KPAGKMAVTE VKLTPSQLAQ KQLTLATDAE KQGKLDKALE YYEKALGFDP
SLHNVRQQLA ALHYGQGRLN NAEQVLQQAV LLYPQEFEFY LLLARVQQEL GEVDLALASL
AQIPDSHVLA RQKWLAQTDL AQKQGQFTLA EQAYRQLLQQ EPQQGKWWMG LGYALDSQQQ
FAKASQAYRT ALSHSGLSAQ ATTFIEQRLS QLGDSQ
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