| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0560 |
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| Symbol | |
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| ID | 5080598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 608452 |
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| End bp | 610128 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640497687 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_001182091 |
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| Protein GI | 146291667 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCGA TCAAATACTT CACGCCTCTG CTCTCACTTT GTCTTGTGGC GTGCCAATCC
ACAGATAGGC CACAACCTGA AGCCTCTAAG GCTGCACTGG CTGCATCAAT GCAAACGGCG
AATCGTGCGA CGACGCCACC TCCCGCAACT ATGCCATATG CAGTGCAACG TGAACTAAAT
TCGGGTGCTT TATTGGCAGG ACTCGCTCCG GCATTAGAAA CCGAGCGACG CTTTGATGTT
TCGGCAAATG ATGTGGATGC GAGAGTGTTT TTTCCTAGCT TAGTGCAAGG TACGCCACTG
AGCGTTGCCG TACATCCCGA GGTGGAGGGC ACGATTTCTC TATCACTAAA GGGCGTTACC
TTAAGTGAAG CTATTCAAGT TGTTGAAGAT ATTTATGGCT ATGAAGTCAG TCGAGAAGGG
CGAGTTTTAC GGGTATTCCC TGCGGGCATG CGTACAGAAA CGTTCCCCTT AAACTACCTC
TATATGGAAC GTGATGGTCT GTCATTGACC TCTGTTAGCT CGGGTCGGAT TTCCGATAAT
AATTCCAACA GTAATACTAA TAACAATAAC AATTCGAATA ACGGTAATTC CAACAATAAT
AGCGGCAATA ACAATTCGAA CAACGGTAGT AATTCAAACA ATAATAGTGA TAGTTCAAAC
GGCACTTTTA TCCGTTCGCG CACTAAAACA GATTTTTGGG GTGATTTAAA AGAAACCCTA
ACGGCCATTA TTGGTGATAC GGGCAATGGG CGTCAGGTGG TTGTTACACC ACAGGCAGGG
TTAGTCACTA TTCGAGCTTT CCCTAGCGAA TTACGCCAAG TACGCAGTTT TTTAAATTCG
GCGGAAACCC ATTTGCAACG CCAAGTTATC CTTGAGGCAA AAATCCTAGA AGTCACACTA
TCGGATGATT TTCAGCAAGG GATCCAATGG GAAAACGTGT TAGGTCATGT GGGAAATACC
AATATTAATT TTGGTACAAC AGCGGGAACT GTGGGCAATA AAGTCACATC CACTCTGGGC
GGTGTAACAT CACTTAGCAT TAAAGGCTCT GATTTCACAA CTATGATCAA TCTATTAGAT
ACTCAGGGTG ATGTGGATGT GTTGTCTAGC CCAAGAGTGA CCGCATCGAA CAATCAAAAA
GCGGTGATTA AGGTCGGCAC TGATGAGTAT TTTGTCACTG ATGTATCTTC AACCACAGTG
GCAGGTACTA CGCCTGTGAC GACGCCACAG GTAGAGTTAA CGCCGTTCTT CTCGGGCATT
GCCTTGGATG TTACACCGCA AATCGATAAA GATGGCAATG TGTTATTGCA TGTTCATCCA
TCGGTTATTG ATGTGAAAGA GCAGACAAAA AATATCAAAG TGAGTAATGA ATCGCTGGAA
TTACCCTTAG CACAGAGTGA GATCCGTGAA TCAGACACAG TGATCCGCGC CGCATCTGGC
GATGTCGTCG TGATCGGTGG ATTGATGAAA AGCGAGAACG TAGAAGTTGT CTCACAGGTG
CCGTTATTGG GTGATATTCC ATTATTAGGC GAGCTGTTTA AAAACCGTAG TAAGCAAAAG
AAGAAAACCG AGCTGATTAT TCTGTTAAAA CCCACCGTTG TTGGCGGTGA TACGTGGAAG
AATGAATTAG AGCGTTCAAA AACCTTATTA GATCGCTGGT ATCCGGAGAC TAAGTAA
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| Protein sequence | MTAIKYFTPL LSLCLVACQS TDRPQPEASK AALAASMQTA NRATTPPPAT MPYAVQRELN
SGALLAGLAP ALETERRFDV SANDVDARVF FPSLVQGTPL SVAVHPEVEG TISLSLKGVT
LSEAIQVVED IYGYEVSREG RVLRVFPAGM RTETFPLNYL YMERDGLSLT SVSSGRISDN
NSNSNTNNNN NSNNGNSNNN SGNNNSNNGS NSNNNSDSSN GTFIRSRTKT DFWGDLKETL
TAIIGDTGNG RQVVVTPQAG LVTIRAFPSE LRQVRSFLNS AETHLQRQVI LEAKILEVTL
SDDFQQGIQW ENVLGHVGNT NINFGTTAGT VGNKVTSTLG GVTSLSIKGS DFTTMINLLD
TQGDVDVLSS PRVTASNNQK AVIKVGTDEY FVTDVSSTTV AGTTPVTTPQ VELTPFFSGI
ALDVTPQIDK DGNVLLHVHP SVIDVKEQTK NIKVSNESLE LPLAQSEIRE SDTVIRAASG
DVVVIGGLMK SENVEVVSQV PLLGDIPLLG ELFKNRSKQK KKTELIILLK PTVVGGDTWK
NELERSKTLL DRWYPETK
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