Gene Sputcn32_0555 details

Gene Information

• Locus tag: Sputcn32_0555
• ID: 5078081
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 603879
• End bp: 605783
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 640497682
• Product: regulatory protein CsrD
• Protein accession: YP_001182086
• Protein GI: 146291662
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTCA CTCGAATGTT AACTACAAAA TTGACCAGTT TTTGGTTGAT GTCTTTAGCT 
GCCATTGCTT TTGTATTTTT ACTCTGTGCC ATGATGAGTT TTGTGCAACT GACCTATAAA 
TTTCAGCAGC AAAAAGTGAC TGAACTCGAA TCTATGTTGG TTAACCATTA TCACGCCCAA 
TCTGGTTGGG AATTGGACTC TTGGTTGCCA CCACTGTTGT TAGCGTACAA TACCGTTGAG 
TTTAAGTTGA CCTTGAAAAC GGAAGTACTA TTCGCTTATC AAGGTAATGT GTTAACACAA 
AATGCCATGG TATATAACCA TCTGCTCGAT CCCAATTCCG ATCTGCGAAT GTCACTCATT 
TTGCCACAGC CTTTTGAGCA ATATCATGTT GGTTGGTACG AGTTTTTAAT CCTCGCGGTA 
GGGATTTTTG CCATTGTTGT TTTAGTGCGT TTTGGTTATT TATGGTTTTC ACAGCAGCTC 
GATGGGATTG AAGAATTAGC ATTACGGAGC CGTTTAATCT TACAAGGAAA GCATGAGCAA 
GCACTGGCGA GCCCAGGTAA AGGTAAACCT CGGTTAATCA ATCGTGCACT GACAAAATTA 
CTTGAAGAGT TGCAGGATGC GCAAAAAGAG CGTGGACGTT TTGATAAATT TATCCGCTCA 
AATACCTTTT TAGATGCTGA GACTCGTATT GGTAATCGAC TTTTCTTAAA TAATCGTCTC 
GATGCTTTAA GTCACAATCA AGGTATGGTT GCCCATGGGG TTATTTACTT ATTAGAGATG 
GATGATCTCG ATTTATTACA GCAAGCGAAA GGTGAGTCTG TAGCCAAAGA GCTTTTAAAT 
TCAACTGTCA ATGGGATTAA TCAGATCCTG CAAACGCTAC CAAACAGTAT TTTTGCCCGT 
CGTTTCCATA ATCAATTTGC CATTGTTGTA CCCCAAGTCT CTTTGATTGA AGCCGATCAA 
CTTGCCAGTA AACTGTTAAA AGTGTGTTTA AGCCAGCCGT TAACGGATGT GGATAATCGA 
GACAATTTTT TCCACTTAGG ATGTGCTTAT TTTACCGCAG GCGACAACGC AACGCAGTTG 
ATCGATGAGG CTGATATGGC CTTACGTGCC GCTCAATTAC AGGGTAACAG TAATTGGTTT 
ATGTACGATA AAGGGGCAAT TGATGAGGAG TTTGCTAAGG GCTCTGTGCG TTGGCGCAGT 
TTTTTAGAGA ATACCTTAGT TCAGCGGCGC TTTTTTCCTT TTAGCCAACC CGTGATTGAT 
TCAGATGCGA ATGAACACCA TAAGGAAATT TTCACCCGTG CAAGGGATAA TCAAGGCGCG 
TTAATTCGTG CCACGCTTTT TATTCCTATG GCCAATAAGT GTGGATTAAT GCCGCAAATC 
GAGCGGCAAA TGATTGAGCG GGTTTTAGCG TTGCTTGCCG ATGAGCGACA TAGTAAACAG 
ATTTATAGTG TGAACTTAAG CCTCGACTCC CTAACGAGCC GTGCCTTTAG CCAGTGGTTA 
AAAACGACTT TGTTGGAATA TCGCCATTTA ACTCCAAGGC TGATATTTGA GGTCTCTGAG 
GATATCGTTA TTCAGCATCA AGCCAAGTTA CAGCCTAAGT TGGATATGAT CCGCAAAATG 
GGGGCAAGGC TCTGTGTTGA TCACGTAGGT CAGCAAGTGG TCGGCACTTA TTATATTCGC 
GAATGTCATT TTGACATGAT TAAACTCCAT CGCTCTATTG TTCGGCATAT TCACTTACGC 
CCTGAAAATC AGCTATTTAT TCGAAGTTTG ATCGGTGGTT TATATCGTAC CGAAGTGCAA 
GTCTGCGCCG AAGGGGTGGA GGTGTTTGAA GAATGGCAAA CATTACAAAT TCTTGGTGTC 
GGTATGGGAC AAGGTATGTT TTTCAGTGAT CCTGTGGAGG CGTAA 

 

Protein sequence

MKFTRMLTTK LTSFWLMSLA AIAFVFLLCA MMSFVQLTYK FQQQKVTELE SMLVNHYHAQ 
SGWELDSWLP PLLLAYNTVE FKLTLKTEVL FAYQGNVLTQ NAMVYNHLLD PNSDLRMSLI 
LPQPFEQYHV GWYEFLILAV GIFAIVVLVR FGYLWFSQQL DGIEELALRS RLILQGKHEQ 
ALASPGKGKP RLINRALTKL LEELQDAQKE RGRFDKFIRS NTFLDAETRI GNRLFLNNRL 
DALSHNQGMV AHGVIYLLEM DDLDLLQQAK GESVAKELLN STVNGINQIL QTLPNSIFAR 
RFHNQFAIVV PQVSLIEADQ LASKLLKVCL SQPLTDVDNR DNFFHLGCAY FTAGDNATQL 
IDEADMALRA AQLQGNSNWF MYDKGAIDEE FAKGSVRWRS FLENTLVQRR FFPFSQPVID 
SDANEHHKEI FTRARDNQGA LIRATLFIPM ANKCGLMPQI ERQMIERVLA LLADERHSKQ 
IYSVNLSLDS LTSRAFSQWL KTTLLEYRHL TPRLIFEVSE DIVIQHQAKL QPKLDMIRKM 
GARLCVDHVG QQVVGTYYIR ECHFDMIKLH RSIVRHIHLR PENQLFIRSL IGGLYRTEVQ 
VCAEGVEVFE EWQTLQILGV GMGQGMFFSD PVEA