Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0498 |
Symbol | |
ID | 5078446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 544314 |
End bp | 546188 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640497625 |
Product | diguanylate cyclase |
Protein accession | YP_001182029 |
Protein GI | 146291605 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAAAG TAAGTCGCTT TCTTTTATTC TTTCTTGGGC TGCTAACGTC TGTAACTTCC GCTGCGGCTT TACTCCACAT CGACACAGAT ACACCAACAC CACTGAACTT AACTCCTTGG CTACAGGTAA GTCATCCTTC AACAACGCAA TTGGCAGATA TCCAGAATCT GTCTAAACAA GAATGGCGTA ACTTTACCAA TAAAGATATT CAAAAACTTA GTCAACATAA CTTTTGGCTA AACATCAGTT TGAATAGTAC TGATGAAAGT CTTTCACGGA TCTTAGCCCT AGATAATCCT TTGTTAGATA AAGTGACTAT CTACCACCTC ATTAATCAAA AACCATTCAA CGTAGTTTAT ATGGGAGATA GTCTGCCTTA CTCTGAACGG CCGTTACTCA GTAATATTTT CCTCTACCCT TTCAAAATCA GTGCTAATGA AGAACACACT TTTTATCTGC ATATTGAAAC GGAAGGCAGC GCAGCAGTCC CACTCTACCT CTGGTCTGCA AATGATTTGG CACAAATAGC AGAATCAACA GCCGTTGAGC ATGGATTTCA ATTAGGGGTG TTAGCTGCTA TAGGCATTTT TAGTCTTTTT ATTGCTGTCG CTTCAGGATC TTTCAGCTAT AGCTACTATT CTGGTTATGT GCTTAGCATG ACTTTACTCG TCGCAACGAT TAACGGCTTC GCTTTCCGTT TTATTTGGCC AGAATGGCCT ATGTTGCAAC AAATTATGGT GCCTATACTA CTACCTGTAG TCATGGCATT CGCGTTGATG TTTACCGAAA AGATTCTGCA ACTCAAATAC TATAATCGCC ATATGCTGCT TATTTGCCGC TACAGCGCTG TATACATTTT ACTCGTTGGG CTATTACTGC CATTTATCCA CTATGGCACA GCCTTATACA TTGAGATTAT TTCAGTCGCC ATTCTCAGCC TCATCCTTAT GGTGCTCGCT ATTATGCAAG CTATCAATGG GCATAAACTT GCCAGACTTT ACACTATAGG TTGGGTCAGC ATGCTAACAG GGGCCTGTAT CAGTAGCCTG CTATACCTGA GCGTGATTGA TTTAAATATG AAACCTCAGA CACCAGTTAT GCTCGGACTC ACCTTTGAGA TCATCTTCAT GTCCCTCGTA CTTGCAATCC GATATAACGA TGAACGTAAG GCAAAACTGC GTATTCAGCA AGAGGCATTA AAGCAAGCCC AGAAAATTCG TAGTGCTCGA GAAGAAGCCC TGAAACTAGA AGCTGAAACG AATGAAAAGC TGGAGCAAAT GGTGCAAGAG CGCACCTTAG AGCTTGAGAT TACACTAAGA GAATTACACG AAGTAAATCA AAAACTCACA GAACAAAGTA CTATCGATAG TCTCACTGGT GTTAAAAACC GCAGCGCTTT TGATAAACGA TTGCTTGCAG AAAGCCGGAT CAGTCGCCGG CAAGAAACTC CTATTGCAGT ATTAATGCTT GATATAGATA AGTTTAAATC AATCAACGAT CAGTTTGGCC ATTTAGCAGG CGACCAAGCA TTAAAGATTA TCGCTCAAAC ATTACAACAA AACTTAAAGC GTCCAACGGA TCTAGTATCA CGTTTTGGTG GTGAAGAGTT TGCTATCATC CTCCCCAATA CAACTGCAGA CGGTGCACTT CAAGTTGCTG AAACTATAAG AGATGCAGTA ACGTCAATTG GTTTAATGTG GGAAGGAAAA CCCATACCTC TCACCGTCAG TATAGGTGTG AGCGCAGATA TAGTCGCTAG CGACCAACAC AGTACAACCT TACTTGAACA AGCAGACAAA GCGCTCTATC AAGCAAAAAA TAGTGGGCGT AATCAAGTGA AATTATATTC TTCTGCAACA GCAGAACCTA ATTAG
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Protein sequence | MAKVSRFLLF FLGLLTSVTS AAALLHIDTD TPTPLNLTPW LQVSHPSTTQ LADIQNLSKQ EWRNFTNKDI QKLSQHNFWL NISLNSTDES LSRILALDNP LLDKVTIYHL INQKPFNVVY MGDSLPYSER PLLSNIFLYP FKISANEEHT FYLHIETEGS AAVPLYLWSA NDLAQIAEST AVEHGFQLGV LAAIGIFSLF IAVASGSFSY SYYSGYVLSM TLLVATINGF AFRFIWPEWP MLQQIMVPIL LPVVMAFALM FTEKILQLKY YNRHMLLICR YSAVYILLVG LLLPFIHYGT ALYIEIISVA ILSLILMVLA IMQAINGHKL ARLYTIGWVS MLTGACISSL LYLSVIDLNM KPQTPVMLGL TFEIIFMSLV LAIRYNDERK AKLRIQQEAL KQAQKIRSAR EEALKLEAET NEKLEQMVQE RTLELEITLR ELHEVNQKLT EQSTIDSLTG VKNRSAFDKR LLAESRISRR QETPIAVLML DIDKFKSIND QFGHLAGDQA LKIIAQTLQQ NLKRPTDLVS RFGGEEFAII LPNTTADGAL QVAETIRDAV TSIGLMWEGK PIPLTVSIGV SADIVASDQH STTLLEQADK ALYQAKNSGR NQVKLYSSAT AEPN
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