| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0485 |
|---|
| Symbol | murD |
|---|
| ID | 5080740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 522404 |
|---|
| End bp | 523723 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640497605 |
|---|
| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
|---|
| Protein accession | YP_001182016 |
|---|
| Protein GI | 146291592 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
|---|
| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGTC AGTATTCACA CATAGTGTTA GGTTTGGGCG CAACGGGGTT GTCCGTTGTA
CGCTATTTGT GTGGAAAGGG CATTACGCCA CTGGTGATGG ATAGCCGTAG ACAACCTCCG
GGGGCGGATA CTCTTGCGGC CTCTTTCCCT GAAGTACAGT TAATTACGGG TGGTTTTGAT
TGTCGCTATT TAGTACAAGC CAGCCAAATT ATTATTAGCC CAGGCATTGC TCTCGATACC
GCTGAAGTGC GTGCAGCGTT AGATATGGGA ATAGAGGTCA TTGGTGACGT TGAACTTTTT
GCCAGAGAAA TCGCAGACCG AAAACCCTGC GTGATTGGTA TTACTGGCTC TAATGGCAAG
TCGACGGTCA CAACCTTAGT CGGTGAAATG CTGCGTGAAG CAGGCATGGC TGTCGCTGTG
GGGGGCAATA TTGGTGTTCC TGCACTAGAT CTGCTGAGCG AGAATGCAGA GATTTTTGTG
CTTGAGCTGT CGAGCTTCCA ACTGGAAACC ACTCACAGCT TGAATTGCGT GGCTTCAACT
TGCTTGAACG TGACGGAAGA TCACATGGAC AGATACAGCG ATATGGATGC CTATCGCAAA
GCAAAGCTGC GTCTGTACCA TCAAAGTCGC TCCATCATTT TTAACCGTGA TGATGCGCTG
ACTATACCTA CCGAACCTAT GAACCAAAAC AGCTTTGGTT TAGCGCCGCC AGAGGGCGAC
GAGTGGGGTA TTTGTGATAG TAAGATTTAT CATGGTCGCA GCGAAATTAT GCCAATTACC
GAAGTGTCGC TAATTGGCAG TCATAACCAT GCCAACTTAC TTGCAGCCAT GGCTCTAGTC
TATGCCGTGG GTGTAGATAA GCAAGTGATA GCGAAGGTAG CTCGCACCTT TACTGGGCTC
TCACACCGCT GTGAAGTGGT TGGGATAAAA GGCGGTGTGA CTTATGTGAA CGATTCCAAG
GCCACCAATG TGGGCGCAAC AGTTGCCGCA CTTGATGGTT TAAGCGATCA CTTAGGCGAC
ATTATTTTAA TTGCTGGCGG TGATGGCAAG GGGGCGGATT TCAGCCCGCT GGTTGAGCCA
CTGAGCAAGG TGACTCATCT GATTACCTTA GGTCGTGATG GCAATAAGAT TGCTGCGCTG
AAGGAAGGGG CTATTAAAGT CGACTCTATG GCTGCAGCCG TTGCCAAGGC GGCTGCATTA
GCCACCTCAG GCGATATCGT TTTATTATCT CCCGCCTGTG CGAGTCTAGA TATGTACAGT
AACTTTATGG CGCGTGGCGA TGATTTCCGC AATCTGGTGG AGCTGCTCGA TGGCGAGTGA
|
|---|
| Protein sequence | MQRQYSHIVL GLGATGLSVV RYLCGKGITP LVMDSRRQPP GADTLAASFP EVQLITGGFD
CRYLVQASQI IISPGIALDT AEVRAALDMG IEVIGDVELF AREIADRKPC VIGITGSNGK
STVTTLVGEM LREAGMAVAV GGNIGVPALD LLSENAEIFV LELSSFQLET THSLNCVAST
CLNVTEDHMD RYSDMDAYRK AKLRLYHQSR SIIFNRDDAL TIPTEPMNQN SFGLAPPEGD
EWGICDSKIY HGRSEIMPIT EVSLIGSHNH ANLLAAMALV YAVGVDKQVI AKVARTFTGL
SHRCEVVGIK GGVTYVNDSK ATNVGATVAA LDGLSDHLGD IILIAGGDGK GADFSPLVEP
LSKVTHLITL GRDGNKIAAL KEGAIKVDSM AAAVAKAAAL ATSGDIVLLS PACASLDMYS
NFMARGDDFR NLVELLDGE
|
|---|
| |