Gene Sputcn32_0413 details

Gene Information

• Locus tag: Sputcn32_0413
• ID: 5081397
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 446653
• End bp: 448464
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640497533
• Product: GTP-binding protein TypA
• Protein accession: YP_001181944
• Protein GI: 146291520
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTAGAGA ATTTACGTAA CATCGCCATT ATTGCACACG TTGACCATGG CAAAACGACC 
CTGGTAGACA AGTTGCTGTC GCAATCAGGA ACCCTTGCAA CCCGGGGAGA AGCTACTGAG 
CGGGTGATGG ACTCCAACGA TCTTGAGAAG GAACGTGGAA TCACGATTCT GGCAAAGAAT 
ACTGCCATCA AGTGGAACGA TTATCGTATC AACATCGTTG ATACCCCAGG CCACGCCGAC 
TTCGGTGGTG AGGTTGAACG TGTTCTGTCT ATGGTTGACT CAGTATTATT GCTGGTTGAT 
GCCGTTGATG GTCCAATGCC ACAGACTCGC TTCGTAACCA AAAAAGCGTT CGCCCAAGGC 
CTAAAGCCAA TCGTTGTTAT CAACAAAATT GATCGTCCAG GTGCTCGCCC TGATTGGGTT 
ATCGACCAAG TGTTCGACCT GTTCGACAAC TTAGGTGCGA CCGACGAACA ATTAGATTTC 
CCAATCGTTT ACGCTTCAGC GTTAAACGGT TTCGCAACTT TAGATCCAGA TGTCGTCAGT 
GAAGATATGA CGCCACTGTT CCAAACTATC GTTGAAAAAG TCTCTTTCCC TGATGCTGAC 
GCCGATGGCG CGTTCCAGAT GCAAATTTCA CAGCTCGATT ACAACTCTTA TGTAGGTGTG 
ATCGGTGTGG GCCGTATCAA TCGTGGTAGC ATCAAAACTA ACCAACAAGT GACTATCATC 
GGTGCCGATG GTAAGACGCG TAACGGTAAA ATGGGCCAAG TATTAGGTTA CATGGGCCTT 
GACCGTACTG AGGTTGAGGT TGCTAATGCT GGCGATATCG TGGCGATTAC GGGTTTAGGC 
GAACTGAAAA TCTCTGATAC TGTCTGTGCC GCTGGTAATG TAGAAGCGCT GCCGCCACTG 
TCTGTTGATG AGCCTACACT GACCATGACT TTCCAAGTCA ACACTTCACC TTTCGCAGGT 
AAAGAAGGTA AGTATGTGAC TTCACGTAAC ATTCTTGAGC GTTTACAACA AGAATTAGTC 
CACAACGTGG CACTGCGTGT TGAAGAAACT GACAGCCCAG ATCGCTTCCG CGTATCAGGC 
CGTGGTGAAT TGCATTTATC AATTTTGATT GAAAACATGC GTCGCGAAGG TTACGAGTTA 
GCCGTATCAC GTCCAGAAGT GATTCTGAAA ACCATCGACG GTGAACTGTG TGAACCATTC 
GAAACGTTGA CCGTTGACGT TGAAGAAGAA CATCAAGGCA CAGTGATCGA GAAGTTGGGT 
ACCCGTAAAG CTGAAATGAA AGATATGCAG CTTGATGGTA AAGGTCGTGT ACGTATCGAC 
TTTATCATCC CAAGCCGTGG TTTGATTGGT TTCCAAACTG AGTTTATGAC TGCGACTTCA 
GGTACTGGTT TAATCTACCA CTCGTTCGAC CATTACGGTC CACATAAAGG TGGCGATATT 
GGTCAACGCG CTAACGGCGT ACTGATCTCT AACGCAACGG GTAAGGCGTT GACCTTCGCA 
CTGTTCGGTC TACAGGATCG TGGTCGTCTC TTTATCGGCC ATGCGGCTGA AGTCTACGAA 
GGCCAAGTAG TTGGTATCCA CGCTCGCTCA AACGATCTAA CAGTTAACTG TTTGAAAGGT 
AAGCAGCTAA CCAACATGCG CGCCTCTGGT ACTGACGAAG CGCAAGTGCT GACTACGCCA 
ATTACCATGA CGCTTGAGCA AGCGCTTGAG TTTATTGATG ATGACGAATT AGTTGAAGTG 
ACGCCGAAAA GCATCCGTGT TCGTAAGAGA CACTTGACTG AAAACGATCG TAAGCGCAAT 
AACCGCGGTT AA 

 

Protein sequence

MLENLRNIAI IAHVDHGKTT LVDKLLSQSG TLATRGEATE RVMDSNDLEK ERGITILAKN 
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG 
LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPDVVS 
EDMTPLFQTI VEKVSFPDAD ADGAFQMQIS QLDYNSYVGV IGVGRINRGS IKTNQQVTII 
GADGKTRNGK MGQVLGYMGL DRTEVEVANA GDIVAITGLG ELKISDTVCA AGNVEALPPL 
SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQQELV HNVALRVEET DSPDRFRVSG 
RGELHLSILI ENMRREGYEL AVSRPEVILK TIDGELCEPF ETLTVDVEEE HQGTVIEKLG 
TRKAEMKDMQ LDGKGRVRID FIIPSRGLIG FQTEFMTATS GTGLIYHSFD HYGPHKGGDI 
GQRANGVLIS NATGKALTFA LFGLQDRGRL FIGHAAEVYE GQVVGIHARS NDLTVNCLKG 
KQLTNMRASG TDEAQVLTTP ITMTLEQALE FIDDDELVEV TPKSIRVRKR HLTENDRKRN 
NRG