| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0395 |
|---|
| Symbol | |
|---|
| ID | 5081379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 428774 |
|---|
| End bp | 429877 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640497515 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001181926 |
|---|
| Protein GI | 146291502 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCAAA TCATCGCTGA TCTGCAGTGT CAGATCCAAA ATCATAAACA CATTAATCTG
AGCGCTGATT TTCGCTGTAA AGCGGGCGAA GTGCTTGCTG TTGTCGGTCC CTCTGGCGGC
GGAAAAACCA CGCTACTGCG GATGATCGCT GGGTTGAATC ATCCCGATAC GGGACAAATC
CACTTTGGCG ATCGGCCTTG GTTTGATGAT AAAGCGCGTA TCGCCTTAAG CCCGCAGCAA
CGCCATATCG GTTATATGCC GCAGCATTTT GGCTTATTTC CGAATCTTAC CGCCCTAGAA
AACGTGGTGG CAGGGCTTGA TCATATTCCC AAGGCGGAGC GCATACCGCG CGCGAAAGAT
TGGCTCGAAA GGGTTAATCT ACAGGGATTA CCCGATAGAT TACCTGCACA TTTATCGGGC
GGCCAGCGCC AGCGCGTCGC CTTAGCAAGA GCGCTTGCCC GCGAACCGTC GGTTTTATTG
TTGGATGAGC CTTTTTCTGC GGTGGACAGG GAAACCCGTG AGCGTTTATA CCTTGAGCTT
GCGCGCCTCA AAGAGCAGTT ACTTTGCCCA GTGATTATGG TCACCCATGA CTTAAATGAA
GCTTTGCTGC TGGCTGATTC GATGATTTTG ATCAGCCAAG GCAAGATGCT GCAGCAGGGT
GCACCTTTCG AGGTATTGTC GCGGCCACGA AATGAAGCTG TAGCTAGGCA GATGGGGCTA
AGAAATATTT TTGATGGTGA AGTGGTATTT CAAGACAGTA CTAAAAACCT CACTTGGCTT
AAGTTTGGTG AGCAGTTAAT TGCCTGCGAT TATGGTAAAG ATCGCCCAGT GGGAAGTCGA
GTCCGTTGGG TTATCCCCAA TCAAGGTATT CGTTTTAATT CGATATCCAA AGGACGTTTA
TGCCGCAGTT TTAATAAGTT AACTGTCACG ATAGACGCTA TGCTGGTGAT GGGTGAATCT
GTTCGGCTTA TCTGCTATGT CGCCGGCACC CAATTACAAA TTAACACCGA AGTCTCGCTG
CATTTTGCCC AAAAGCTTGC TCTCACTAAG GGAATGCAAA CCACAGTGGC ACTCAAATCT
GAACAAATTC ATATTCTGGA ATAG
|
|---|
| Protein sequence | MAQIIADLQC QIQNHKHINL SADFRCKAGE VLAVVGPSGG GKTTLLRMIA GLNHPDTGQI
HFGDRPWFDD KARIALSPQQ RHIGYMPQHF GLFPNLTALE NVVAGLDHIP KAERIPRAKD
WLERVNLQGL PDRLPAHLSG GQRQRVALAR ALAREPSVLL LDEPFSAVDR ETRERLYLEL
ARLKEQLLCP VIMVTHDLNE ALLLADSMIL ISQGKMLQQG APFEVLSRPR NEAVARQMGL
RNIFDGEVVF QDSTKNLTWL KFGEQLIACD YGKDRPVGSR VRWVIPNQGI RFNSISKGRL
CRSFNKLTVT IDAMLVMGES VRLICYVAGT QLQINTEVSL HFAQKLALTK GMQTTVALKS
EQIHILE
|
|---|
| |