| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0354 |
|---|
| Symbol | |
|---|
| ID | 5081288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 387323 |
|---|
| End bp | 389098 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640497474 |
|---|
| Product | fumarate reductase flavoprotein subunit |
|---|
| Protein accession | YP_001181885 |
|---|
| Protein GI | 146291461 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01176] fumarate reductase, flavoprotein subunit
[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAACCA TAACCACAGA TGTGGCGGTC ATCGGCGCTG GTGGCGCGGG TCTTCGCGCA
GCAATTGCTG CAGCAGAGGC GAATCCAAAG CTAAGTATCG CTCTCATTTC CAAAGTATAT
CCAATGCGCT CACATACCGT GGCTGCCGAA GGCGGTTCGG CTGCGGTAAT TAAAGATGAA
GACAGTCTGG ATAACCATTT CAATGATACG GTTGCCGGTG GCGACTGGCT ATGTGAACAA
GACGTTGTCG AGTATTTCGT CGAGAATGCA CTACGTGAAA TGACCCAGTT AGAACTCTGG
GGTTGTCCGT GGAGCCGAAA ACCTAACGGT GAAATTAACG TGCGCCGCTT TGGTGGAATG
AAGATTGAGC GAACTTGGTT TGCGGCCGAT AAAACGGGTT TTCACATGCT ACACACCCTT
TTTCAAACAT CAATGAAGTA CAGCAATATC GTGCGCTATG ACGAATTCTT CGTGCTGGAT
CTCATCGTTG TCGATAATGA AGTGCAAGGT GTTATCGCCC TATGTATTGC TGAAGGCGAG
CTCGTTTGCT TTAAAGCCAA ATCGGTGATC CTGGCAACAG GTGGTGGTGG CCGTGTCTAC
CACTTCAACA CCAATGGCGG CATAGTCACA GGTGATGGAA TGGCGATTGC CTATCGTCAT
GGCGTACCAC TGCGTGATAT GGAGTTTGTG CAATATCACC CAACGGGTTT ACCCGGTACG
GGGATTTTGA TGACGGAAGG ATGTCGCGGT GAAGGCGGTA TCATGGTCAA TAAAGATGGT
TATCGTTATC TGCAGGATTA TGGTCTAGGG CCAGAAACCC CCGTTGGTCA ACCACAAAAC
AAATACATGG AATTAGGCCC TCGCGATAAG GTTTCTCAAG CATTTTGGCA TGAGCAACGT
AAGGGAAATA CCATCAAACA TCCTCTGGGA GATGTAGTTC ACTTAGATTT ACGCCACTTA
GGTGAAGACT ACCTCAAAGA GCGCTTACCT TTTATCTGTG AACTAGCAAA GGCCTATGTC
AACGTAGACC CAGCGAAAGA ACCCATTCCT ATTCGCCCTA CCGCCCATTA CACCATGGGA
GGTCTTGAAA CCGATCCTCA AACTGAAACC CAAATTAAAG GCTTGTTTGC CGTTGGTGAA
TGTTCTTCAG TTGGCTTACA CGGTGCTAAC CGCCTTGGTT CTAACTCGCT AGCAGAGCTT
GTTGTGTTTG GCCGATTAGC TGGTGAAACC GCGGCTAAGC GCGCCGCAGA ATTTCAAGGA
TGGAACTACG ATGCGATTAA TGAACAAGCC GCAGCCGTTG AGGCCCGTCT CGATGCGCTA
TTAGCTCAGA AAGGTACAGA GAACTGGTCT GATGTACGTA CTGAAATGTG TAAGAGCATG
GAATCTGGTT GTGGCATCTA CCGCGATGAA GCAGGTATGC AAGCAACGAT AGATAAACTC
GCTGAGCTGC GCTTACGTTA TAAAAACATC CAAATCACCG ATAAAGGCAA AGTATTTAAT
ACTGATTTGC TTTATGCCAT TGAAGTCGGC TTTAGCTTAG ATGTTGCCGA GGCCATGGCA
CACTCCGCAA TTCAGCGCCG AGAATCACGC GGCGCCCATC AACGGCTCGA CGAAGGCTGT
AACTCGCGTA ATGACAAGGA TTATCTAAAA CACTCCCTTG CACTCTATAA CCCTAATTCT
GTGCCAACCA TCAAGTACAG CGAGGTGAAG ATTACTAAGT CTCAACCTCA AGCTCGCCTG
TATGGTGATG CCGCAAAACA GCAGGAGAAA GTCTAA
|
|---|
| Protein sequence | MKTITTDVAV IGAGGAGLRA AIAAAEANPK LSIALISKVY PMRSHTVAAE GGSAAVIKDE
DSLDNHFNDT VAGGDWLCEQ DVVEYFVENA LREMTQLELW GCPWSRKPNG EINVRRFGGM
KIERTWFAAD KTGFHMLHTL FQTSMKYSNI VRYDEFFVLD LIVVDNEVQG VIALCIAEGE
LVCFKAKSVI LATGGGGRVY HFNTNGGIVT GDGMAIAYRH GVPLRDMEFV QYHPTGLPGT
GILMTEGCRG EGGIMVNKDG YRYLQDYGLG PETPVGQPQN KYMELGPRDK VSQAFWHEQR
KGNTIKHPLG DVVHLDLRHL GEDYLKERLP FICELAKAYV NVDPAKEPIP IRPTAHYTMG
GLETDPQTET QIKGLFAVGE CSSVGLHGAN RLGSNSLAEL VVFGRLAGET AAKRAAEFQG
WNYDAINEQA AAVEARLDAL LAQKGTENWS DVRTEMCKSM ESGCGIYRDE AGMQATIDKL
AELRLRYKNI QITDKGKVFN TDLLYAIEVG FSLDVAEAMA HSAIQRRESR GAHQRLDEGC
NSRNDKDYLK HSLALYNPNS VPTIKYSEVK ITKSQPQARL YGDAAKQQEK V
|
|---|
| |